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atm1 ABC family Fe transporter Atm1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542779, updated on 18-Sep-2024

Summary

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Official Symbol
atm1
Official Full Name
ABC family Fe transporter Atm1
Primary source
PomBase:SPAC15A10.01
Locus tag
SPOM_SPAC15A10.01
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC8C9.18
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Genomic context

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See atm1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (3675079..3677834)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene V-type ATPase inhibitor and disassembly protein in response to oxidative stress Oxr1 Neighboring gene ncRNA Neighboring gene DASH complex subunit Spc34 Neighboring gene ncRNA Neighboring gene SAGA complex/transcription factor TFIID complex subunit A Taf12 Neighboring gene ncRNA Neighboring gene DNA repair protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitochondrial ABC transporter Atm1p is required for protection against oxidative stress and vacuolar functions in Schizosaccharomyces pombe. Iwaki T, et al. Biosci Biotechnol Biochem, 2005 Nov. PMID 16306692
  2. The role of mitochondria and the CIA machinery in the maturation of cytosolic and nuclear iron-sulfur proteins. Lill R, et al. Eur J Cell Biol, 2015 Jul-Sep. PMID 26099175
  3. Mitochondria export iron-sulfur and sulfur intermediates to the cytoplasm for iron-sulfur cluster assembly and tRNA thiolation in yeast. Pandey AK, et al. J Biol Chem, 2019 Jun 14. PMID 31040179, Free PMC Article
  4. A survey of all 11 ABC transporters in fission yeast: two novel ABC transporters are required for red pigment accumulation in a Schizosaccharomyces pombe adenine biosynthetic mutant. Iwaki T, et al. Microbiology (Reading), 2006 Aug. PMID 16849797
  5. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. fission yeast Atm1p was not only involved in protection against oxidative stress, but also played a role in fluid-phase endocytosis and vacuolar fusion
    Title: Mitochondrial ABC transporter Atm1p is required for protection against oxidative stress and vacuolar functions in Schizosaccharomyces pombe.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ABC-type iron-sulfur cluster transporter activity TAS
Traceable Author Statement
more info
 PubMed 
enables ATP binding ISM
Inferred from Sequence Model
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in iron-sulfur cluster assembly ISO
Inferred from Sequence Orthology
more info
 PubMed 
involved_in iron-sulfur cluster export from the mitochondrion TAS
Traceable Author Statement
more info
 PubMed 
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion HDA PubMed 
is_active_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ABC family Fe transporter Atm1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3675079..3677834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019711.3 → NP_594288.2  ABC family Fe transporter Atm1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594288.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13721, O14286
    Conserved Domains (3) summary
    cd03253
    Location:443 → 680
    ABCC_ATM1_transporter; ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C
    COG5265
    Location:182 → 677
    ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
    pfam00664
    Location:123 → 397
    ABC_membrane; ABC transporter transmembrane region
Nucleotide Protein
Heading Accession and Version

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