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hht1 histone H3 h3.1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542467, updated on 18-Sep-2024

Summary

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Official Symbol
hht1
Official Full Name
histone H3 h3.1
Primary source
PomBase:SPAC1834.04
Locus tag
SPOM_SPAC1834.04
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See hht1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4699732..4700560)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene multifunctional aromatic polypeptide Aro1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene histone H4 h4.1 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dynamic regulation of replication independent deposition of histone H3 in fission yeast. Choi ES, et al. Nucleic Acids Res, 2005. PMID 16361268, Free PMC Article
  2. The binding of Chp2's chromodomain to methylated H3K9 is essential for Chp2's role in heterochromatin assembly in fission yeast. Maksimov V, et al. PLoS One, 2018. PMID 30110338, Free PMC Article
  3. The Chp1 chromodomain binds the H3K9me tail and the nucleosome core to assemble heterochromatin. Zocco M, et al. Cell Discov, 2016. PMID 27462451, Free PMC Article
  4. The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin. Shan CM, et al. Cell Rep, 2021 May 18. PMID 34010645, Free PMC Article
  5. Division of labor between the chromodomains of HP1 and Suv39 methylase enables coordination of heterochromatin spread. Al-Sady B, et al. Mol Cell, 2013 Jul 11. PMID 23849629, Free PMC Article

See all (57) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The findings extend our understanding of epigenetic regulation during gametogenesis and support a link between Set7, the epigenetic H3K37 methyl mark, and proper gametogenesis.
    Title: Set7 Is a H3K37 Methyltransferase in Schizosaccharomyces pombe and Is Required for Proper Gametogenesis.
  2. Replication-independent deposition of histone H3 occurs preferentially at euchromatic regions.
    Title: Dynamic regulation of replication independent deposition of histone H3 in fission yeast.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA binding ISM
Inferred from Sequence Model
more info
  
enables chromatin-protein adaptor activity EXP
Inferred from Experiment
more info
 PubMed 
enables chromatin-protein adaptor activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA damage response IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in heterochromatin boundary formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in heterochromatin formation EXP
Inferred from Experiment
more info
 PubMed 
involved_in mitotic sister chromatid biorientation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pericentric heterochromatin formation EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in mating-type region heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nucleosome ISM
Inferred from Sequence Model
more info
  
is_active_in nucleus EXP
Inferred from Experiment
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in pericentric heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in subtelomeric heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
histone H3 h3.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4699732..4700560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020112.3 → NP_594683.1  histone H3 h3.1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594683.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P09988, P10651
    Conserved Domains (2) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
    pfam00125
    Location:1 → 132
    Histone; Core histone H2A/H2B/H3/H4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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