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vps41 HOPS complex subunit Vps41 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542058, updated on 18-Sep-2024

Summary

Official Symbol
vps41
Official Full Name
HOPS complex subunit Vps41
Primary source
PomBase:SPAP27G11.05c
Locus tag
SPOM_SPAP27G11.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

See vps41 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003424.3 (1615703..1618903, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene translation initiation factor eIF2 assembly protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-specific adenosine deaminase subunit Tad3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene AP-1 adaptor complex sigma subunit Aps1 Neighboring gene serine/threonine protein kinase

General gene information

Gene Ontology Provided by PomBase

Process Evidence Code Pubs
involved_in Golgi to endosome transport  
involved_in cellular response to starvation  
involved_in endosomal vesicle fusion  
involved_in late endosome to vacuole transport  
involved_in macroautophagy  
involved_in protein targeting to vacuole  
involved_in vacuole fusion, non-autophagic  
involved_in vesicle docking  
Component Evidence Code Pubs
part_of HOPS complex  
is_active_in cytoplasm PubMed 
is_active_in late endosome  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1615703..1618903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018842.3NP_593409.2  HOPS complex subunit Vps41 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593409.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P7N3
    Conserved Domains (5) summary
    smart00299
    Location:625712
    CLH; Clathrin heavy chain repeat homology
    COG2319
    Location:29254
    WD40; WD40 repeat [General function prediction only]
    pfam00637
    Location:628714
    Clathrin; Region in Clathrin and VPS
    sd00039
    Location:4478
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:44204
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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