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yar1 ribosome biogenesis protein Yar1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541266, updated on 18-Sep-2024

Summary

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Official Symbol
yar1
Official Full Name
ribosome biogenesis protein Yar1
Primary source
PomBase:SPBP16F5.05c
Locus tag
SPOM_SPBP16F5.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See yar1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1907025..1907753, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene SAGA complex, phosphatidylinositol pseudokinase subunit Tra1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquitin-conjugating enzyme Ubc7 Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein Nop8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in ribosome biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
part_of preribosome, small subunit precursor ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ribosome biogenesis protein Yar1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1907025..1907753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021679.3 → NP_595779.1  ribosome biogenesis protein Yar1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595779.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9HFE7
    Conserved Domains (3) summary
    cd00204
    Location:6 → 124
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:6 → 101
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:6 → 33
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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