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ell1 RNA polymerase II transcription elongation factor Ell1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541257, updated on 18-Sep-2024

Summary

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Official Symbol
ell1
Official Full Name
RNA polymerase II transcription elongation factor Ell1
Primary source
PomBase:SPBP23A10.14c
Locus tag
SPOM_SPBP23A10.14C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ell1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (2028610..2031140, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene FRG1 family mRNA-processing protein Neighboring gene origin recognition complex subunit Orc4 Neighboring gene ncRNA Neighboring gene tRNA-Asn

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional interaction between ELL transcription elongation factor and Epe1 reveals the role of Epe1 in the regulation of transcription outside heterochromatin. Sweta K, et al. Mol Microbiol, 2021 Jul. PMID 33533152
  2. The amino-terminal domain of ELL transcription elongation factor is essential for ELL function in Schizosaccharomyces pombe. Sweta K, et al. Microbiology (Reading), 2017 Nov. PMID 29043956
  3. Structure function characterization of the ELL Associated Factor (EAF) from Schizosaccharomyces pombe. Dabas P, et al. Gene, 2018 Jan 30. PMID 29032152
  4. Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex. Gopalan S, et al. Nucleic Acids Res, 2018 Nov 2. PMID 30102332, Free PMC Article
  5. Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL. Banks CA, et al. J Biol Chem, 2007 Feb 23. PMID 17150956

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Functional interaction between ELL transcription elongation factor and Epe1 reveals the role of Epe1 in the regulation of transcription outside heterochromatin.
    Title: Functional interaction between ELL transcription elongation factor and Epe1 reveals the role of Epe1 in the regulation of transcription outside heterochromatin.
  2. This complex includes S. pombe Ell1, Eaf1, and a previously uncharacterized protein we designate Ell1 binding protein 1 (Ebp1), which is distantly related to metazoan AFF family members. Like the metazoan SEC, this S. pombe ELL complex appears to function broadly in Pol II transcription.
    Title: Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription elongation factor activity EXP
Inferred from Experiment
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of super elongation complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase II transcription elongation factor Ell1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2028610..2031140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021730.3 → NP_595826.1  RNA polymerase II transcription elongation factor Ell1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595826.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P7X2
    Conserved Domains (1) summary
    pfam10390
    Location:63 → 269
    ELL; RNA polymerase II elongation factor ELL
Nucleotide Protein
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