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lin1 U5 snRNP complex subunit LIN1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541061, updated on 18-Sep-2024

Summary

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Official Symbol
lin1
Official Full Name
U5 snRNP complex subunit LIN1
Primary source
PomBase:SPBC83.09c
Locus tag
SPOM_SPBC83.09C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
snu40
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Genomic context

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See lin1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (1525577..1527116, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Lid2 complex histone demethylase H3-K36 subunit Jmj3 Neighboring gene ncRNA Neighboring gene chaperone, AAA family ATPase Rvb2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Emc7 Neighboring gene ncRNA Neighboring gene triose phosphate transmembrane transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
  2. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  3. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in spliceosomal tri-snRNP complex assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of U5 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
U5 snRNP complex subunit LIN1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1525577..1527116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021535.3 → NP_595641.1  U5 snRNP complex subunit LIN1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595641.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94693
    Conserved Domains (1) summary
    smart00444
    Location:343 → 401
    GYF; Contains conserved Gly-Tyr-Phe residues
Nucleotide Protein
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