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fap1 L-pipecolate oxidase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540916, updated on 18-Sep-2024

Summary

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Official Symbol
fap1
Official Full Name
L-pipecolate oxidase
Primary source
PomBase:SPBC354.15
Locus tag
SPOM_SPBC354.15
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See fap1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (586543..588261)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Rho-type GTPase-activating protein Rga6 Neighboring gene ncRNA Neighboring gene protein Vac8 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tip elongation aberrant protein Tea4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of two fructosyl-amino acid oxidase homologs of Schizosaccharomyces pombe. Yoshida N, et al. J Biosci Bioeng, 2004. PMID 16233628
  2. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  3. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables L-pipecolate oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-pipecolate oxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables flavin adenine dinucleotide binding IDA
Inferred from Direct Assay
more info
 PubMed 
NOT enables fructosyl-amino acid oxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables proline dehydrogenase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables proline dehydrogenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables sarcosine oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in L-lysine catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
L-pipecolate oxidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    586543..588261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021145.3 → NP_595239.1  L-pipecolate oxidase [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O43029
    Conserved Domains (2) summary
    COG0665
    Location:1 → 391
    DadA; Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]
    pfam13450
    Location:9 → 38
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
Nucleotide Protein
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