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rfc5 DNA replication factor C complex subunit Rfc5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540215, updated on 14-Nov-2024

Summary

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Official Symbol
rfc5
Official Full Name
DNA replication factor C complex subunit Rfc5
Primary source
PomBase:SPBC83.14c
Locus tag
SPOM_SPBC83.14C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rfc5 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (1534421..1536111, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene tricarboxylic acid transporter Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein wdr74 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Contrasting effects of Elg1-RFC and Ctf18-RFC inactivation in the absence of fully functional RFC in fission yeast. Kim J, et al. Nucleic Acids Res, 2005. PMID 16040599, Free PMC Article
  2. Fidelity of eucaryotic DNA polymerase delta holoenzyme from Schizosaccharomyces pombe. Chen X, et al. J Biol Chem, 2000 Jun 9. PMID 10748208
  3. In vitro reconstitution of the Schizosaccharomyces pombe alternative excision repair pathway. Alleva JL, et al. Biochemistry, 2000 Mar 14. PMID 10704216
  4. RFCCtf18 and the Swi1-Swi3 complex function in separate and redundant pathways required for the stabilization of replication forks to facilitate sister chromatid cohesion in Schizosaccharomyces pombe. Ansbach AB, et al. Mol Biol Cell, 2008 Feb. PMID 18045993, Free PMC Article
  5. The S. pombe translation initiation factor eIF4G is Sumoylated and associates with the SUMO protease Ulp2. Jongjitwimol J, et al. PLoS One, 2014. PMID 24818994, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP hydrolysis activity NAS
Non-traceable Author Statement
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
contributes_to DNA clamp loader activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA clamp unloader activity IC
Inferred by Curator
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in DNA strand elongation involved in mitotic DNA replication IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in DNA-templated DNA replication IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in UV-damage excision repair IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of Ctf18 RFC-like complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of DNA replication factor C complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Elg1 RFC-like complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Elg1 RFC-like complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of Rad17 RFC-like complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in chromatin IC
Inferred by Curator
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DNA replication factor C complex subunit Rfc5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1534421..1536111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021540.3 → NP_595646.1  DNA replication factor C complex subunit Rfc5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595646.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94697
    Conserved Domains (3) summary
    cd00009
    Location:23 → 177
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    PRK12402
    Location:1 → 340
    PRK12402; replication factor C small subunit 2; Reviewed
    pfam08542
    Location:253 → 340
    Rep_fac_C; Replication factor C C-terminal domain
Nucleotide Protein
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