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ngl1 peptide N-glycanase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539952, updated on 18-Sep-2024

Summary

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Official Symbol
ngl1
Official Full Name
peptide N-glycanase
Primary source
PomBase:SPBC1709.14
Locus tag
SPOM_SPBC1709.14
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
png1
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Genomic context

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See ngl1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003423.3 (1126472..1127990)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GTPase-binding protein Rid1 Neighboring gene ribosomal lysine methyltransferase Set10 Neighboring gene ncRNA Neighboring gene mRNA processing protein Cft2 Neighboring gene aromatic ring-opening dioxygenase Neighboring gene ncRNA Neighboring gene putative folylpolyglutamate synthase Neighboring gene translation initiation factor eIF4E, 4F complex E subunit isoform 2, stress response factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [Expression, purification and characterization of N-glycanase from Schizosaccharomyces pombe in Escherichia coli]. Xin F, et al. Sheng Wu Gong Cheng Xue Bao, 2008 Apr. PMID 18616168
  2. Molecular identification and characterization of peptide: N-glycanase from Schizosaccharomyces pombe. Xin F, et al. Biochem Biophys Res Commun, 2008 Apr 18. PMID 18279662
  3. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables metal ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables misfolded protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in ERAD pathway IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein quality control for misfolded or incompletely synthesized proteins ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nuclear envelope HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
peptide N-glycanase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1126472..1127990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021356.3 → NP_595447.1  peptide N-glycanase [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A9LPA9, O74739
    Conserved Domains (3) summary
    COG1305
    Location:156 → 207
    YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
    pfam01841
    Location:118 → 207
    Transglut_core; Transglutaminase-like superfamily
    pfam03835
    Location:192 → 248
    Rad4; Rad4 transglutaminase-like domain
Nucleotide Protein
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