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rpl502 60S ribosomal protein L5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539680, updated on 18-Sep-2024

Summary

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Official Symbol
rpl502
Official Full Name
60S ribosomal protein L5
Primary source
PomBase:SPBC11C11.09c
Locus tag
SPOM_SPBC11C11.09C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
rpl5-2; rpl5b
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Genomic context

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See rpl502 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3364710..3365644, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 60S ribosomal protein L18 Neighboring gene pre-mRNA-splicing factor srp1 Neighboring gene ncRNA Neighboring gene tRNA pseudouridine synthase Neighboring gene ncRNA Neighboring gene ATP-dependent DNA helicase Irc3 Neighboring gene RNA polymerase I transcription factor subunit Rrn6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of Csh3 as an SH3 protein that interacts with fission yeast Cap1. Yamamoto T, et al. FEMS Yeast Res, 2015 Dec. PMID 26542710
  2. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
  3. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 5S rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
  
involved_in ribosomal large subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
60S ribosomal protein L5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3364710..3365644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022319.3 → NP_596399.1  60S ribosomal protein L5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596399.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74306, Q76N21
    Conserved Domains (3) summary
    PTZ00069
    Location:1 → 291
    PTZ00069; 60S ribosomal protein L5; Provisional
    pfam00861
    Location:26 → 173
    Ribosomal_L18p; Ribosomal L18p/L5e family
    pfam14204
    Location:193 → 283
    Ribosomal_L18_c; Ribosomal L18 C-terminal region
Nucleotide Protein
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