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jmj4 histone demethylase Jmj4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539424, updated on 18-Sep-2024

Summary

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Official Symbol
jmj4
Official Full Name
histone demethylase Jmj4
Primary source
PomBase:SPCC622.19
Locus tag
SPOM_SPCC622.19
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
mug149
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Genomic context

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See jmj4 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (1438195..1439921)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene AP endonuclease, minor transcript isoform Apn1 Neighboring gene siderophore-Fe(3+) transporter Str2 Neighboring gene 60S ribosomal protein eL6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SAGA complex subunit Spt3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  2. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  3. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 2-oxoglutarate-dependent dioxygenase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone demethylase activity ISM
Inferred from Sequence Model
more info
  
enables peptidyl-lysine 3-dioxygenase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in chromatin remodeling ISM
Inferred from Sequence Model
more info
  
Component Evidence Code Pubs
is_active_in chromatin ISM
Inferred from Sequence Model
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
histone demethylase Jmj4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1438195..1439921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023181.3 → NP_588191.1  histone demethylase Jmj4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588191.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94606
    Conserved Domains (1) summary
    cl21464
    Location:29 → 420
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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