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pet127 RNA metabolism pathway protein Pet127 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539021, updated on 18-Sep-2024

Summary

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Official Symbol
pet127
Official Full Name
RNA metabolism pathway protein Pet127
Primary source
PomBase:SPCC1183.04c
Locus tag
SPOM_SPCC1183.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See pet127 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (597500..599385, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene exocyst complex subunit Sec15 Neighboring gene ncRNA Neighboring gene glutathione S-transferase Neighboring gene ncRNA Neighboring gene frataxin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA repair ligase Lig4 Neighboring gene uracil DNA N-glycosylase Ung1 Neighboring gene protein Spo13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA degradation in fission yeast mitochondria is stimulated by a member of a new family of proteins that are conserved in lower eukaryotes. Wiesenberger G, et al. J Mol Biol, 2007 Mar 30. PMID 17292401
  2. The 3' ends of mature transcripts are generated by a processosome complex in fission yeast mitochondria. Hoffmann B, et al. J Mol Biol, 2008 Apr 4. PMID 18304578
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mitochondrial RNA 5'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitochondrial RNA catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in mitochondrial envelope IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrial envelope IGI
Inferred from Genetic Interaction
more info
 PubMed 
is_active_in mitochondrial matrix ISO
Inferred from Sequence Orthology
more info
  
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
RNA metabolism pathway protein Pet127

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    597500..599385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022879.3 → NP_587887.1  RNA metabolism pathway protein Pet127 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587887.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74832
    Conserved Domains (1) summary
    pfam08634
    Location:107 → 381
    Pet127; Mitochondrial protein Pet127
Nucleotide Protein
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