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BC048671 cDNA sequence BC048671 [ Mus musculus (house mouse) ]

Gene ID: 243535, updated on 27-Nov-2024

Summary

Official Symbol
BC048671provided by MGI
Official Full Name
cDNA sequence BC048671provided by MGI
Primary source
MGI:MGI:2679261
See related
Ensembl:ENSMUSG00000049694 AllianceGenome:MGI:2679261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C3orf22 (chromosome 3 open reading frame 22). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 114.4) See more
Orthologs
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Genomic context

See BC048671 in Genome Data Viewer
Location:
6 D1; 6 40.12 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (90278201..90282430)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (90301219..90305448)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 34 Neighboring gene vomeronasal 1 receptor 54 Neighboring gene carbohydrate sulfotransferase 13 Neighboring gene urocanase domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Clone Names

  • MGC58841

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C3orf22 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358298.1NP_001345227.1  uncharacterized protein C3orf22 homolog

    Status: VALIDATED

    Source sequence(s)
    AC122521, AK077180, BC048671
    Consensus CDS
    CCDS20357.1
    UniProtKB/Swiss-Prot
    Q8C5S3
    Related
    ENSMUSP00000132052.3, ENSMUST00000167550.4
  2. NM_177738.3NP_808406.1  uncharacterized protein C3orf22 homolog

    See identical proteins and their annotated locations for NP_808406.1

    Status: VALIDATED

    Source sequence(s)
    AC122521, AK077180
    Consensus CDS
    CCDS20357.1
    UniProtKB/Swiss-Prot
    Q8C5S3
    Related
    ENSMUSP00000058483.3, ENSMUST00000054799.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    90278201..90282430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)