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Mab21l3 mab-21-like 3 [ Mus musculus (house mouse) ]

Gene ID: 242125, updated on 27-Nov-2024

Summary

Official Symbol
Mab21l3provided by MGI
Official Full Name
mab-21-like 3provided by MGI
Primary source
MGI:MGI:2446273
See related
Ensembl:ENSMUSG00000044313 AllianceGenome:MGI:2446273
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human MAB21L3 (mab-21 like 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in subcutaneous fat pad adult (RPKM 4.3), ovary adult (RPKM 1.8) and 10 other tissues See more
Orthologs
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Genomic context

See Mab21l3 in Genome Data Viewer
Location:
3 F2.2; 3 44.3 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (101720392..101743601, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (101813076..101836283, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:101474732-101474841 Neighboring gene predicted gene, 33265 Neighboring gene STARR-seq mESC enhancer starr_08545 Neighboring gene STARR-seq mESC enhancer starr_08546 Neighboring gene STARR-seq mESC enhancer starr_08547 Neighboring gene predicted gene, 33309 Neighboring gene STARR-positive B cell enhancer ABC_E6090 Neighboring gene predicted gene, 33381 Neighboring gene solute carrier family 22 (organic anion/cation transporter), member 15 Neighboring gene STARR-seq mESC enhancer starr_08552 Neighboring gene STARR-seq mESC enhancer starr_08553 Neighboring gene nescient helix loop helix 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (1) 

General gene information

Markers

Clone Names

  • MGC47256

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172295.4NP_758499.3  protein mab-21-like 3

    See identical proteins and their annotated locations for NP_758499.3

    Status: VALIDATED

    Source sequence(s)
    AK161057, BB008605, CN663841
    Consensus CDS
    CCDS17684.1
    UniProtKB/Swiss-Prot
    Q3TKM3, Q8CE43, Q8CI17
    Related
    ENSMUSP00000059212.5, ENSMUST00000061831.11
    Conserved Domains (1) summary
    pfam03281
    Location:125418
    Mab-21; Mab-21 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    101720392..101743601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240120.4XP_011238422.1  protein mab-21-like 3 isoform X1

    See identical proteins and their annotated locations for XP_011238422.1

    UniProtKB/Swiss-Prot
    Q3TKM3, Q8CE43, Q8CI17
    Related
    ENSMUSP00000112730.2, ENSMUST00000118411.2
    Conserved Domains (1) summary
    pfam03281
    Location:125418
    Mab-21; Mab-21 protein