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Cd52 CD52 antigen [ Mus musculus (house mouse) ]

Gene ID: 23833, updated on 27-Nov-2024

Summary

Official Symbol
Cd52provided by MGI
Official Full Name
CD52 antigenprovided by MGI
Primary source
MGI:MGI:1346088
See related
Ensembl:ENSMUSG00000000682 AllianceGenome:MGI:1346088
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B7; MB7; CLS1; B7-Ag; CAMPATH-1
Summary
Acts upstream of or within response to bacterium. Located in sperm midpiece. Is expressed in embryo mesenchyme and thymus primordium. Orthologous to human CD52 (CD52 molecule). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in genital fat pad adult (RPKM 628.5), spleen adult (RPKM 137.4) and 4 other tissues See more
Orthologs
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Genomic context

See Cd52 in Genome Data Viewer
Location:
4 D2.3; 4 66.5 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (133820849..133822384, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (134093538..134095073, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 683 Neighboring gene crystallin beta-gamma domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E1658 Neighboring gene STARR-positive B cell enhancer ABC_E9600 Neighboring gene STARR-positive B cell enhancer ABC_E842 Neighboring gene STARR-positive B cell enhancer ABC_E4678 Neighboring gene STARR-positive B cell enhancer ABC_E10264 Neighboring gene UBX domain protein 11 Neighboring gene STARR-seq mESC enhancer starr_11667 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:133677585-133677803 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:133680177-133680360 Neighboring gene SH3 domain binding glutamic acid-rich protein-like 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (8) 
  • Targeted (3)  1 citation

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in side of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in sperm midpiece IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in sperm midpiece IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
CAMPATH-1 antigen
Names
lymphocyte differentiation antigen B7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013706.2NP_038734.1  CAMPATH-1 antigen precursor

    See identical proteins and their annotated locations for NP_038734.1

    Status: VALIDATED

    Source sequence(s)
    AK155728, BC027495
    Consensus CDS
    CCDS38909.1
    UniProtKB/Swiss-Prot
    Q64389
    UniProtKB/TrEMBL
    Q3U1T8
    Related
    ENSMUSP00000000696.7, ENSMUST00000000696.7
    Conserved Domains (1) summary
    pfam15116
    Location:3774
    CD52; CAMPATH-1 antigen

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    133820849..133822384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)