Tcstv2a 2 cell stage variable group member 2A [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Tcstv2aprovided by MGI
Official Full Name: 2 cell stage variable group member 2Aprovided by MGI
Primary source: MGI:MGI:2681166
See related: Ensembl:ENSMUSG00000095071 AllianceGenome:MGI:2681166
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: 13 D2.3; 13

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	13	NC_000079.7 (120724631..120726053)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	13	NC_000079.6 (120263095..120264517)

Chromosome 13 - NC_000079.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein LOC236546

Names: 2-cell-stage gene family; clone L4 variable group of 2-cell-stage gene family; clone L8 variable group of 2-cell-stage gene family

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001310627.1 → NP_001297556.1 uncharacterized protein LOC236546

See identical proteins and their annotated locations for NP_001297556.1

Status: VALIDATED

Description

Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.

Source sequence(s)

AC239678

Consensus CDS

CCDS84071.1

UniProtKB/TrEMBL

O70616, Q3USZ4

Conserved Domains (1) summary

pfam07270
Location:7 → 157

DUF1438; Protein of unknown function (DUF1438)
NM_199060.2 → NP_951015.1 uncharacterized protein LOC236546

See identical proteins and their annotated locations for NP_951015.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.

Source sequence(s)

AC239678

Consensus CDS

CCDS84071.1

UniProtKB/TrEMBL

O70616, Q3USZ4

Related

ENSMUSP00000137949.2, ENSMUST00000181748.2

Conserved Domains (1) summary

pfam07270
Location:7 → 157

DUF1438; Protein of unknown function (DUF1438)