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Fam240a family with sequence similarity 240 member A [ Mus musculus (house mouse) ]

Gene ID: 235634, updated on 9-Dec-2024

Summary

Official Symbol
Fam240aprovided by MGI
Official Full Name
family with sequence similarity 240 member Aprovided by MGI
Primary source
MGI:MGI:2685436
See related
Ensembl:ENSMUSG00000096393 AllianceGenome:MGI:2685436
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm590
Summary
Orthologous to human FAM240A (family with sequence similarity 240 member A). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Fam240a in Genome Data Viewer
Location:
9; 9 F2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (110743444..110756579, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (110914376..110916898, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene transmembrane inner ear Neighboring gene ALS2 C-terminal like Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:110810109-110810292 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:110810303-110810412 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:110810673-110810995 Neighboring gene CRISPRi-validated Tdgf1 proximal enhancer Neighboring gene cripto, EGF-CFC family member Neighboring gene leucine rich repeat containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195437.2NP_001182366.1  protein FAM240A

    See identical proteins and their annotated locations for NP_001182366.1

    Status: VALIDATED

    Source sequence(s)
    AC139378
    Consensus CDS
    CCDS57707.1
    UniProtKB/TrEMBL
    J3QNP9
    Related
    ENSMUSP00000136900.2, ENSMUST00000177678.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    110743444..110756579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036154919.1XP_036010812.1  protein FAM240A isoform X1

    UniProtKB/TrEMBL
    J3QNP9