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BC035044 cDNA sequence BC035044 [ Mus musculus (house mouse) ]

Gene ID: 232406, updated on 27-Nov-2024

Summary

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Official Symbol
BC035044provided by MGI
Official Full Name
cDNA sequence BC035044provided by MGI
Primary source
MGI:MGI:2448540
See related
Ensembl:ENSMUSG00000090164 AllianceGenome:MGI:2448540
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in spleen adult (RPKM 3.2), thymus adult (RPKM 2.2) and 14 other tissues See more
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Genomic context

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See BC035044 in Genome Data Viewer
Location:
6 F3; 6 63.1 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (128825007..128868087, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (128848044..128891124, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene killer cell lectin-like receptor subfamily B member 1B Neighboring gene STARR-positive B cell enhancer ABC_E8136 Neighboring gene STARR-positive B cell enhancer ABC_E862 Neighboring gene STARR-positive B cell enhancer ABC_E8137 Neighboring gene STARR-positive B cell enhancer ABC_E863 Neighboring gene predicted gene, 44066 Neighboring gene STARR-seq mESC enhancer starr_17467 Neighboring gene STARR-seq mESC enhancer starr_17468 Neighboring gene predicted gene, 34849 Neighboring gene STARR-seq mESC enhancer starr_17469 Neighboring gene STARR-positive B cell enhancer ABC_E8138 Neighboring gene STARR-positive B cell enhancer ABC_E8139 Neighboring gene thioredoxin domain containing 9 pseudogene Neighboring gene C-type lectin domain family 2, member i Neighboring gene predicted gene, 38905 Neighboring gene C-type lectin domain family 2, member g Neighboring gene predicted gene 15987 Neighboring gene STARR-seq mESC enhancer starr_17470 Neighboring gene microRNA 7649

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC232406

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254946.1 → NP_001241875.1  uncharacterized protein LOC232406 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC102693, BC035044
    Consensus CDS
    CCDS57450.1
    UniProtKB/TrEMBL
    E0CXF8
    Related
    ENSMUSP00000125357.2, ENSMUST00000160290.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    128825007..128868087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001254947.1: Suppressed sequence

    Description
    NM_001254947.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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