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Vasp vasodilator-stimulated phosphoprotein [ Mus musculus (house mouse) ]

Gene ID: 22323, updated on 27-Nov-2024

Summary

Official Symbol
Vaspprovided by MGI
Official Full Name
vasodilator-stimulated phosphoproteinprovided by MGI
Primary source
MGI:MGI:109268
See related
Ensembl:ENSMUSG00000030403 AllianceGenome:MGI:109268
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable profilin binding activity. Acts upstream of or within actin cytoskeleton organization; axon guidance; and neural tube closure. Located in filopodium; focal adhesion; and lamellipodium. Is expressed in several structures, including adipose tissue; brain; genitourinary system; hemolymphoid system gland; and liver. Orthologous to human VASP (vasodilator stimulated phosphoprotein). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in colon adult (RPKM 234.9), duodenum adult (RPKM 170.7) and 24 other tissues See more
Orthologs
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Genomic context

See Vasp in Genome Data Viewer
Location:
7 A3; 7 9.51 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (18990854..19005779, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (19256929..19271854, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene optic atrophy 3 Neighboring gene predicted gene, 25134 Neighboring gene predicted gene, 38499 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) Neighboring gene reticulon 2 (Z-band associated protein)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 
enables actin binding IEA
Inferred from Electronic Annotation
more info
 
enables profilin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables profilin binding IEA
Inferred from Electronic Annotation
more info
 
enables profilin binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within actin cytoskeleton organization IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in actin polymerization or depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in actin polymerization or depolymerization IEA
Inferred from Electronic Annotation
more info
 
involved_in axon guidance IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within axon guidance IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in neural tube closure IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within neural tube closure IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in positive regulation of actin filament polymerization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of actin filament polymerization ISO
Inferred from Sequence Orthology
more info
 
involved_in protein homotetramerization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in filopodium IDA
Inferred from Direct Assay
more info
PubMed 
located_in filopodium membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in focal adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in focal adhesion IDA
Inferred from Direct Assay
more info
PubMed 
located_in focal adhesion ISO
Inferred from Sequence Orthology
more info
 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
located_in lamellipodium IDA
Inferred from Direct Assay
more info
PubMed 
located_in lamellipodium membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in postsynapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vasodilator-stimulated phosphoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282021.1NP_001268950.1  vasodilator-stimulated phosphoprotein isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
    Source sequence(s)
    AK140329, BB850928, CO040918
    UniProtKB/Swiss-Prot
    P70460
    Conserved Domains (2) summary
    cd01207
    Location:5113
    EVH1_Ena_VASP-like; Enabled/VASP family EVH1 domain
    pfam08776
    Location:336370
    VASP_tetra; VASP tetramerization domain
  2. NM_001282022.1NP_001268951.1  vasodilator-stimulated phosphoprotein isoform 3

    See identical proteins and their annotated locations for NP_001268951.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1.
    Source sequence(s)
    AK140329, BB850928, CO040918
    UniProtKB/Swiss-Prot
    P70460
    Conserved Domains (3) summary
    cd01207
    Location:5104
    EVH1_Ena_VASP-like; Enabled/VASP family EVH1 domain
    pfam08687
    Location:235350
    ASD2; Apx/Shroom domain ASD2
    pfam08776
    Location:327361
    VASP_tetra; VASP tetramerization domain
  3. NM_009499.3NP_033525.2  vasodilator-stimulated phosphoprotein isoform 1

    See identical proteins and their annotated locations for NP_033525.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AK140329, BB850928, CO040918
    Consensus CDS
    CCDS52056.1
    UniProtKB/Swiss-Prot
    P70460, Q3TAP0, Q3TCD2, Q3U0C2, Q3UDF1, Q91VD2, Q9R214
    Related
    ENSMUSP00000032561.9, ENSMUST00000032561.9
    Conserved Domains (2) summary
    cd01207
    Location:5113
    EVH1_Ena_VASP-like; Enabled/VASP family EVH1 domain
    pfam08776
    Location:337371
    VASP_tetra; VASP tetramerization domain

RNA

  1. NR_104069.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two internal exons, and uses two alternate splice sites in internal exons, compared to variant 1. This variant is represented as non-coding because it lacks a significant portion of the coding region and does not encode a supported protein.
    Source sequence(s)
    AK140329, BB850928, CO040918

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    18990854..19005779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)