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Fam167a family with sequence similarity 167, member A [ Mus musculus (house mouse) ]

Gene ID: 219148, updated on 27-Nov-2024

Summary

Official Symbol
Fam167aprovided by MGI
Official Full Name
family with sequence similarity 167, member Aprovided by MGI
Primary source
MGI:MGI:3606565
See related
Ensembl:ENSMUSG00000035095 AllianceGenome:MGI:3606565
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A030013D21
Summary
Is expressed in several structures, including alimentary system; brain; long bone; nasal cavity epithelium; and rib cage. Orthologous to human FAM167A (family with sequence similarity 167 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 13.5), lung adult (RPKM 4.4) and 11 other tissues See more
Orthologs
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Genomic context

See Fam167a in Genome Data Viewer
Location:
14 D1; 14 33.28 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (63673843..63702951)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (63436394..63465502)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm245 Neighboring gene predicted gene, 36165 Neighboring gene predicted gene, 46458 Neighboring gene B lymphoid kinase Neighboring gene STARR-positive B cell enhancer ABC_E5448 Neighboring gene STARR-seq mESC enhancer starr_36924 Neighboring gene STARR-seq mESC enhancer starr_36926 Neighboring gene predicted gene 17232 Neighboring gene L-threonine dehydrogenase Neighboring gene myotubularin related protein 9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177628.5NP_808296.2  protein FAM167A

    See identical proteins and their annotated locations for NP_808296.2

    Status: VALIDATED

    Source sequence(s)
    AC090496
    Consensus CDS
    CCDS27201.1
    UniProtKB/Swiss-Prot
    Q6P1G6
    Related
    ENSMUSP00000113962.2, ENSMUST00000121288.2
    Conserved Domains (1) summary
    pfam11652
    Location:131215
    FAM167

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    63673843..63702951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518878.5XP_006518941.1  protein FAM167A isoform X1

    See identical proteins and their annotated locations for XP_006518941.1

    UniProtKB/Swiss-Prot
    Q6P1G6
    Conserved Domains (1) summary
    pfam11652
    Location:131215
    FAM167
  2. XM_006518877.5XP_006518940.1  protein FAM167A isoform X1

    See identical proteins and their annotated locations for XP_006518940.1

    UniProtKB/Swiss-Prot
    Q6P1G6
    Conserved Domains (1) summary
    pfam11652
    Location:131215
    FAM167