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Fam117a family with sequence similarity 117, member A [ Mus musculus (house mouse) ]

Gene ID: 215512, updated on 27-Nov-2024

Summary

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Official Symbol
Fam117aprovided by MGI
Official Full Name
family with sequence similarity 117, member Aprovided by MGI
Primary source
MGI:MGI:2144564
See related
Ensembl:ENSMUSG00000038893 AllianceGenome:MGI:2144564
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5730593F17Rik
Summary
Is expressed in rhombomere 3 and rhombomere 5. Orthologous to human FAM117A (family with sequence similarity 117 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in liver E14.5 (RPKM 25.9), thymus adult (RPKM 23.5) and 23 other tissues See more
Orthologs
human all
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Genomic context

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See Fam117a in Genome Data Viewer
Location:
11 D; 11 59.01 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (95227844..95272698)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (95337018..95381872)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9370 Neighboring gene K(lysine) acetyltransferase 7 Neighboring gene STARR-positive B cell enhancer ABC_E9840 Neighboring gene STARR-positive B cell enhancer ABC_E376 Neighboring gene STARR-positive B cell enhancer ABC_E1841 Neighboring gene predicted gene 11520 Neighboring gene STARR-seq mESC enhancer starr_30502 Neighboring gene STARR-positive B cell enhancer ABC_E594 Neighboring gene STARR-positive B cell enhancer ABC_E3009 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:95253828-95254029 Neighboring gene STARR-seq mESC enhancer starr_30505 Neighboring gene solute carrier family 35, member B1 Neighboring gene STARR-positive B cell enhancer ABC_E3010 Neighboring gene STARR-positive B cell enhancer ABC_E10708 Neighboring gene speckle-type BTB/POZ protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Rhombomere-specific analysis reveals the repertoire of genetic cues expressed across the developing hindbrain. Chambers D, et al. Neural Dev, 2009 Feb 10. PMID 19208226, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein FAM117A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172543.4 → NP_766131.2  protein FAM117A

    See identical proteins and their annotated locations for NP_766131.2

    Status: VALIDATED

    Source sequence(s)
    AK143632, AK165378, BC055690
    Consensus CDS
    CCDS25276.1
    UniProtKB/Swiss-Prot
    Q3TJJ0, Q3TND5, Q7TNF9, Q8BJY9
    Related
    ENSMUSP00000049162.7, ENSMUST00000037502.7
    Conserved Domains (1) summary
    pfam15388
    Location:86 → 397
    FAM117; Protein Family FAM117

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    95227844..95272698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006532835.4 → XP_006532898.1  protein FAM117A isoform X3

    Conserved Domains (1) summary
    pfam15388
    Location:37 → 348
    FAM117; Protein Family FAM117

  2. XM_006532837.3 → XP_006532900.1  protein FAM117A isoform X4

    See identical proteins and their annotated locations for XP_006532900.1

    Conserved Domains (1) summary
    pfam15388
    Location:1 → 259
    FAM117; Protein Family FAM117

  3. XM_006532836.3 → XP_006532899.1  protein FAM117A isoform X4

    See identical proteins and their annotated locations for XP_006532899.1

    Conserved Domains (1) summary
    pfam15388
    Location:1 → 259
    FAM117; Protein Family FAM117

  4. XM_006532834.3 → XP_006532897.3  protein FAM117A isoform X2

    Conserved Domains (1) summary
    pfam15388
    Location:79 → 390
    FAM117; Protein Family FAM117

  5. XM_006532833.5 → XP_006532896.1  protein FAM117A isoform X1

    Conserved Domains (1) summary
    pfam15388
    Location:83 → 394
    FAM117; Protein Family FAM117
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7TNF9.1 GenPept UniProtKB/Swiss-Prot:Q7TNF9

Gene LinkOut

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