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BC002059 cDNA sequence BC002059 [ Mus musculus (house mouse) ]

Gene ID: 213811, updated on 2-Nov-2024

Summary

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Official Symbol
BC002059provided by MGI
Official Full Name
cDNA sequence BC002059provided by MGI
Primary source
MGI:MGI:2384864
See related
Ensembl:ENSMUSG00000060149 AllianceGenome:MGI:2384864
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including aorta; dorsal root ganglion; genitourinary system; gut; and trachea. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in bladder adult (RPKM 3.1), CNS E18 (RPKM 2.8) and 21 other tissues See more
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Genomic context

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See BC002059 in Genome Data Viewer
Location:
17 A3.1; 17 9.77 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (17171798..17194419)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (16951536..16974157)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene 6705 Neighboring gene cyclin B1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_41941 Neighboring gene STARR-positive B cell enhancer ABC_E1932 Neighboring gene STARR-positive B cell enhancer ABC_E4193 Neighboring gene predicted gene, 51425 Neighboring gene STARR-seq mESC enhancer starr_41945 Neighboring gene zinc finger protein 960

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. MiR-19b-3p regulated by BC002059/ABHD10 axis promotes cell apoptosis in myocardial infarction. Liao B, et al. Biol Direct, 2022 Aug 18. PMID 35978367, Free PMC Article
  2. m(6)A-modified lincRNA Dubr is required for neuronal development by stabilizing YTHDF1/3 and facilitating mRNA translation. Huang J, et al. Cell Rep, 2022 Nov 22. PMID 36417851
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MiR-19b-3p regulated by BC002059/ABHD10 axis promotes cell apoptosis in myocardial infarction.
    Title: MiR-19b-3p regulated by BC002059/ABHD10 axis promotes cell apoptosis in myocardial infarction.
Submit: New GeneRIF Correction

General gene information

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Clone Names

  • MGC6110

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166920.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC151298
    Related
    ENSMUST00000232328.4

  2. NR_166921.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC151298
    Related
    ENSMUST00000190415.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    17171798..17194419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_145397.1: Suppressed sequence

    Description
    NM_145397.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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