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Wfdc5 WAP four-disulfide core domain 5 [ Mus musculus (house mouse) ]

Gene ID: 209232, updated on 27-Nov-2024

Summary

Official Symbol
Wfdc5provided by MGI
Official Full Name
WAP four-disulfide core domain 5provided by MGI
Primary source
MGI:MGI:2384800
See related
Ensembl:ENSMUSG00000040154 AllianceGenome:MGI:2384800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Prg5; Wap1
Summary
Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in antibacterial humoral response and innate immune response. Predicted to be active in extracellular space. Orthologous to human WFDC5 (WAP four-disulfide core domain 5). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in stomach adult (RPKM 3.7) and lung adult (RPKM 2.8) See more
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Genomic context

See Wfdc5 in Genome Data Viewer
Location:
2 H3; 2 84.6 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (164018245..164024662, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (164176325..164182742, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6014 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:163910112-163910326 Neighboring gene serine/threonine kinase 4 Neighboring gene STARR-positive B cell enhancer mm9_chr2:163954265-163954566 Neighboring gene K+ voltage-gated channel, subfamily S, 1 Neighboring gene RIKEN cDNA A730032A03 gene Neighboring gene predicted gene, 53202 Neighboring gene STARR-seq mESC enhancer starr_06321 Neighboring gene WAP four-disulfide core domain 12 Neighboring gene WAP four-disulfide core domain 15A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (1)  1 citation

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in antibacterial humoral response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
WAP four-disulfide core domain protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145369.3NP_663344.2  WAP four-disulfide core domain protein 5 precursor

    See identical proteins and their annotated locations for NP_663344.2

    Status: VALIDATED

    Source sequence(s)
    AK131905, AL591512, AV091316, AY669505
    Consensus CDS
    CCDS17023.1
    UniProtKB/TrEMBL
    Q4KXB6, Q8VE57
    Related
    ENSMUSP00000035824.6, ENSMUST00000045127.12
    Conserved Domains (1) summary
    pfam00095
    Location:80121
    WAP; WAP-type (Whey Acidic Protein) 'four-disulfide core'

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    164018245..164024662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001781780.3 RNA Sequence