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Bod1l1 biorientation of chromosomes in cell division 1-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 207118, updated on 4-Jan-2025

Summary

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Official Symbol
Bod1l1provided by RGD
Official Full Name
biorientation of chromosomes in cell division 1-like 1provided by RGD
Primary source
RGD:621413
See related
EnsemblRapid:ENSRNOG00000050437 AllianceGenome:RGD:621413
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Abp10; Bod1l; Abp-10
Summary
Predicted to be involved in DNA damage response and replication fork processing. Predicted to be located in nucleoplasm. Predicted to be part of Set1C/COMPASS complex. Orthologous to human BOD1L1 (biorientation of chromosomes in cell division 1 like 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Thymus (RPKM 121.2), Lung (RPKM 115.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Bod1l1 in Genome Data Viewer
Location:
14q21
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (73320880..73375662)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (69108483..69163255)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (73738137..73792935)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene high mobility group box 2 like 2 Neighboring gene uncharacterized LOC120096625 Neighboring gene uncharacterized LOC108352768 Neighboring gene uncharacterized LOC102550431 Neighboring gene NK3 homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. BOD1L Is Required to Suppress Deleterious Resection of Stressed Replication Forks. Higgs MR, et al. Mol Cell, 2015 Aug 6. PMID 26166705
  2. Molecular cloning and characterization of annexin V-binding proteins with highly hydrophilic peptide structure. Ohsawa K, et al. J Neurochem, 1996 Jul. PMID 8667030
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in DNA damage response ISO
Inferred from Sequence Orthology
more info
  
involved_in replication fork processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in replication fork processing ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Set1C/COMPASS complex ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
biorientation of chromosomes in cell division protein 1-like 1
Names
annexin V-binding protein ABP-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    73320880..73375662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039092813.2 → XP_038948741.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A1A3
    Conserved Domains (4) summary
    PTZ00121
    Location:287 → 1146
    PTZ00121; MAEBL; Provisional
    TIGR00927
    Location:1574 → 1818
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05205
    Location:55 → 148
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    cl27929
    Location:2750 → 2929
    Pox_A30L_A26L; Orthopoxvirus A26L/A30L protein

  2. XM_039092815.2 → XP_038948743.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I6A1A3
    Related
    ENSRNOP00000087813.2, ENSRNOT00000099934.2
    Conserved Domains (4) summary
    PTZ00121
    Location:287 → 1146
    PTZ00121; MAEBL; Provisional
    TIGR00927
    Location:1574 → 1808
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05205
    Location:55 → 148
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    cl27929
    Location:2750 → 2929
    Pox_A30L_A26L; Orthopoxvirus A26L/A30L protein

  3. XM_039092814.2 → XP_038948742.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A1A3, M0RC54
    Related
    ENSRNOP00000067163.3, ENSRNOT00000070998.4
    Conserved Domains (4) summary
    PTZ00121
    Location:287 → 1146
    PTZ00121; MAEBL; Provisional
    TIGR00927
    Location:1574 → 1818
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05205
    Location:55 → 148
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    cl27929
    Location:2747 → 2926
    Pox_A30L_A26L; Orthopoxvirus A26L/A30L protein

  4. XM_039092816.2 → XP_038948744.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I6A1A3, A0A8I6A9H5
    Conserved Domains (4) summary
    PTZ00121
    Location:287 → 1146
    PTZ00121; MAEBL; Provisional
    TIGR00927
    Location:1574 → 1808
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05205
    Location:55 → 148
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    cl27929
    Location:2747 → 2926
    Pox_A30L_A26L; Orthopoxvirus A26L/A30L protein

  5. XM_039092817.2 → XP_038948745.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A1A3
    Conserved Domains (4) summary
    PTZ00121
    Location:287 → 1041
    PTZ00121; MAEBL; Provisional
    TIGR00927
    Location:1574 → 1818
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05205
    Location:55 → 148
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    cl27929
    Location:2485 → 2664
    Pox_A30L_A26L; Orthopoxvirus A26L/A30L protein

  6. XM_039092818.2 → XP_038948746.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X6

    UniProtKB/TrEMBL
    A0A8I6A1A3
    Conserved Domains (4) summary
    PTZ00121
    Location:287 → 1041
    PTZ00121; MAEBL; Provisional
    TIGR00927
    Location:1574 → 1818
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam05205
    Location:55 → 148
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    cl27929
    Location:2482 → 2661
    Pox_A30L_A26L; Orthopoxvirus A26L/A30L protein

  7. XM_063273779.1 → XP_063129849.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X7

    UniProtKB/TrEMBL
    A0A8I6A1A3
Nucleotide Protein Strain
Heading Accession and Version

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