U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Shc3 src homology 2 domain-containing transforming protein C3 [ Mus musculus (house mouse) ]

Gene ID: 20418, updated on 27-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Shc3provided by MGI
Official Full Name
src homology 2 domain-containing transforming protein C3provided by MGI
Primary source
MGI:MGI:106179
See related
Ensembl:ENSMUSG00000021448 AllianceGenome:MGI:106179
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rai; ShcC; N-Shc
Summary
Predicted to enable phosphotyrosine residue binding activity and receptor tyrosine kinase binding activity. Acts upstream of or within glutamatergic synaptic transmission and learning or memory. Predicted to be located in synapse. Predicted to be active in plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and liver and biliary system. Orthologous to human SHC3 (SHC adaptor protein 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in cortex adult (RPKM 15.6), frontal lobe adult (RPKM 13.9) and 6 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Shc3 in Genome Data Viewer
Location:
13 A5; 13 26.12 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (51577422..51724909, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (51423389..51569451, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 13_636.1 Neighboring gene predicted gene, 32834 Neighboring gene STARR-seq mESC enhancer starr_34512 Neighboring gene STARR-positive B cell enhancer ABC_E8528 Neighboring gene sphingosine-1-phosphate receptor 3 Neighboring gene STARR-seq mESC enhancer starr_34513 Neighboring gene STARR-seq mESC enhancer starr_34514 Neighboring gene STARR-seq mESC enhancer starr_34516 Neighboring gene STARR-seq mESC enhancer starr_34519 Neighboring gene STARR-positive B cell enhancer ABC_E926 Neighboring gene predicted gene, 52049 Neighboring gene predicted gene, 22806 Neighboring gene CDC28 protein kinase regulatory subunit 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Differential Proteomic Analysis of Astrocytes and Astrocytes-Derived Extracellular Vesicles from Control and Rai Knockout Mice: Insights into the Mechanisms of Neuroprotection. Montecchi T, et al. Int J Mol Sci, 2021 Jul 25. PMID 34360699, Free PMC Article
  2. Rai acts as a negative regulator of autoimmunity by inhibiting antigen receptor signaling and lymphocyte activation. Savino MT, et al. J Immunol, 2009 Jan 1. PMID 19109161
  3. Lack of changes in the PI3K/AKT survival pathway in the spinal cord motor neurons of a mouse model of familial amyotrophic lateral sclerosis. Peviani M, et al. Mol Cell Neurosci, 2007 Apr. PMID 17303436
  4. Deficit of p66ShcA restores redox-sensitive stress response program in cisplatin-induced acute kidney injury. Rattanavich R, et al. Exp Mol Pathol, 2013 Jun. PMID 23506954, Free PMC Article
  5. The Rai (Shc C) adaptor protein regulates the neuronal stress response and protects against cerebral ischemia. Troglio F, et al. Proc Natl Acad Sci U S A, 2004 Oct 26. PMID 15494442, Free PMC Article

See all (47) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Differential Proteomic Analysis of Astrocytes and Astrocytes-Derived Extracellular Vesicles from Control and Rai Knockout Mice: Insights into the Mechanisms of Neuroprotection.
    Title: Differential Proteomic Analysis of Astrocytes and Astrocytes-Derived Extracellular Vesicles from Control and Rai Knockout Mice: Insights into the Mechanisms of Neuroprotection.
  2. The Shc protein Rai enhances T-cell survival under hypoxia.
    Title: The Shc protein Rai enhances T-cell survival under hypoxia.
  3. Rai deficiency enhances the ability of astrocytes to upregulate the expression and activity of the ectonucleotidase CD39, which catalyzes the conversion of extracellular ATP to the immunosuppressive metabolite adenosine, through both contact-dependent and-independentmechanisms.
    Title: A T Cell Suppressive Circuitry Mediated by CD39 and Regulated by ShcC/Rai Is Induced in Astrocytes by Encephalitogenic T Cells.
  4. The results provide evidence that Rai/ShcC plays opposite roles in Th17 cell differentiation and astrocyte activation
    Title: The Adaptor Protein Rai/ShcC Promotes Astrocyte-Dependent Inflammation during Experimental Autoimmune Encephalomyelitis.
  5. Deficit of p66ShcA restores redox-sensitive stress response program in cisplatin-induced acute kidney injury.
    Title: Deficit of p66ShcA restores redox-sensitive stress response program in cisplatin-induced acute kidney injury.
  6. Rai (ShcC/N-Shc), a member of the family of Shc-like adaptor proteins, as a new regulator of migration of normal and cancer stem/progenitor cells.
    Title: Rai is a new regulator of neural progenitor migration and glioblastoma invasion.
  7. Rai interferes with the TCR signaling cascade one of the earliest steps--recruitment of the initiating kinase ZAP-70 to the phosphorylated subunit of the TCR/CD3 complex.
    Title: The Shc family protein adaptor, Rai, negatively regulates T cell antigen receptor signaling by inhibiting ZAP-70 recruitment and activation.
  8. TrkB-mediated ERK1/2 activation is impaired in huntingtin knock-in striatal cells involves reduced p52/p46 Shc expression
    Title: Impaired TrkB-mediated ERK1/2 activation in huntington disease knock-in striatal cells involves reduced p52/p46 Shc expression.
  9. study reports co-localization of adaptor proteins nShc & Grb10, with Kv1.3 channel in the olfactory bulb neural lamina; BDNF-induced current suppression of the Kv1.3 channel was prevented by both nShc and Grb10
    Title: Brain-derived neurotrophic factor modulation of Kv1.3 channel is disregulated by adaptor proteins Grb10 and nShc.
  10. Expressed in T and B cells; loss of Rai results in breaking of immunological tolerance and development of systemic autoimmunity.
    Title: Rai acts as a negative regulator of autoimmunity by inhibiting antigen receptor signaling and lymphocyte activation.
Submit: New GeneRIF Correction See all GeneRIFs (16)

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (1)  1 citation

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC124163

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables phosphotyrosine residue binding ISO
Inferred from Sequence Orthology
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables receptor tyrosine kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within learning or memory IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within synaptic transmission, glutamatergic IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SHC-transforming protein 3
Names
SH2 domain protein C3
SHC-transforming protein C
neuronal Shc

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009167.5 → NP_033193.3  SHC-transforming protein 3

    Status: VALIDATED

    Source sequence(s)
    AC159104
    Consensus CDS
    CCDS49265.2
    UniProtKB/TrEMBL
    A0A5F8MPM1
    Related
    ENSMUSP00000158865.2, ENSMUST00000239056.2
    Conserved Domains (2) summary
    cd09925
    Location:492 → 594
    SH2_SHC; Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)
    cd01209
    Location:139 → 310
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    51577422..51724909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157949.1 → XP_036013842.1  SHC-transforming protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A5F8MPM1
    Conserved Domains (2) summary
    cd09925
    Location:492 → 594
    SH2_SHC; Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)
    cd01209
    Location:139 → 310
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q61120.2 GenPept UniProtKB/Swiss-Prot:Q61120

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous