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Zfp106 zinc finger protein 106 [ Mus musculus (house mouse) ]

Gene ID: 20402, updated on 27-Nov-2024

Summary

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Official Symbol
Zfp106provided by MGI
Official Full Name
zinc finger protein 106provided by MGI
Primary source
MGI:MGI:1270153
See related
Ensembl:ENSMUSG00000027288 AllianceGenome:MGI:1270153
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
H3a; Cd-1; sirm; Sh3bp3; Znf106; D2Dcr28; zfp-106; EyeLinc12
Summary
Enables SH3 domain binding activity and opioid peptide activity. Acts upstream of or within insulin receptor signaling pathway. Located in cytosol and membrane. Is expressed in several structures, including adipose tissue; brain; esophagus; genitourinary system; and musculature. Used to study amyotrophic lateral sclerosis. Orthologous to human ZNF106 (zinc finger protein 106). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in heart adult (RPKM 47.5), frontal lobe adult (RPKM 16.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Zfp106 in Genome Data Viewer
Location:
2 E5; 2 60.37 cM
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (120337303..120394345, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (120506820..120563864, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene STARR-positive B cell enhancer ABC_E10133 Neighboring gene STARR-positive B cell enhancer ABC_E9071 Neighboring gene glucosidase, alpha; neutral C Neighboring gene RIKEN cDNA 4931402G19 gene Neighboring gene STARR-seq mESC enhancer starr_05508 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:120308865-120309066 Neighboring gene calpain 3 Neighboring gene STARR-seq mESC enhancer starr_05509 Neighboring gene STARR-seq mESC enhancer starr_05510 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:120393240-120393349 Neighboring gene STARR-seq mESC enhancer starr_05511 Neighboring gene synaptosomal-associated protein 23 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:120435029-120435138 Neighboring gene STARR-seq mESC enhancer starr_05512 Neighboring gene leucine rich repeat containing 57 Neighboring gene HAUS augmin-like complex, subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Zfp106 binds to G-quadruplex RNAs and inhibits RAN translation and formation of RNA foci caused by G4C2 repeats. Celona B, et al. Proc Natl Acad Sci U S A, 2024 Jul 30. PMID 39042693,
  2. Suppression of C9orf72 RNA repeat-induced neurotoxicity by the ALS-associated RNA-binding protein Zfp106. Celona B, et al. Elife, 2017 Jan 10. PMID 28072389, Free PMC Article
  3. End-targeting proteomics of isolated chromatin segments of a mammalian ribosomal RNA gene promoter. Ide S, et al. Nat Commun, 2015 Mar 27. PMID 25812914, Free PMC Article
  4. Subcellular recruitment by TSG118 and TSPYL implicates a role for zinc finger protein 106 in a novel developmental pathway. Grasberger H, et al. Int J Biochem Cell Biol, 2005 Jul. PMID 15833274
  5. Cell autonomous phosphoinositide 3-kinase activation in oocytes disrupts normal ovarian function through promoting survival and overgrowth of ovarian follicles. Kim SY, et al. Endocrinology, 2015 Apr. PMID 25594701, Free PMC Article

See all (48) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Zfp106 binds to G-quadruplex RNAs and inhibits RAN translation and formation of RNA foci caused by G4C2 repeats.
    Title: Zfp106 binds to G-quadruplex RNAs and inhibits RAN translation and formation of RNA foci caused by G4C2 repeats.
  2. The authors identify the zinc finger protein Zfp106 as a specific GGGGCC RNA repeat-binding protein, and using affinity purification-mass spectrometry, they show that Zfp106 interacts with multiple other RNA binding proteins, including the amyotrophic lateral sclerosis-associated factors TDP-43 and FUS.
    Title: Suppression of C9orf72 RNA repeat-induced neurotoxicity by the ALS-associated RNA-binding protein Zfp106.
  3. Findings indicate a central role for Zfp106 in the maintenance of nerve-muscle signaling.
    Title: Severe muscle wasting and denervation in mice lacking the RNA-binding protein ZFP106.
  4. Zfp106-/- mice develop severe gait and motor abnormalities that deteriorate with age. The motor abnormalities exhibited by Zfp106-/- mice are likely due to a severe progressive adult-onset degenerative sensory-motor axonopathy.
    Title: Deficiency of the zinc finger protein ZFP106 causes motor and sensory neurodegeneration.
  5. ZFP106 is a novel factor regulating transcription initiation by targeting RNA polymerase I to the promoter.
    Title: End-targeting proteomics of isolated chromatin segments of a mammalian ribosomal RNA gene promoter.
  6. ZFP106 is a potential player in a novel pathway involved in testis development
    Title: Subcellular recruitment by TSG118 and TSPYL implicates a role for zinc finger protein 106 in a novel developmental pathway.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables SH3 domain binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables opioid peptide activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in insulin receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within insulin receptor signaling pathway IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 106
Names
H3a minor histocompatibility antigen
SH3-domain binding protein 3
zinc finger protein 474

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420972.1 → NP_001407901.1  zinc finger protein 106 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL772299

  2. NM_001420973.1 → NP_001407902.1  zinc finger protein 106 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL772299, AL935121
    Related
    ENSMUSP00000128995.2, ENSMUST00000171215.8

  3. NM_001420974.1 → NP_001407903.1  zinc finger protein 106 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL772299, AL935121

  4. NM_001420975.1 → NP_001407904.1  zinc finger protein 106 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL772299, AL935121

  5. NM_001420976.1 → NP_001407905.1  zinc finger protein 106 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL772299

  6. NM_001420977.1 → NP_001407906.1  zinc finger protein 106 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL772299

  7. NM_011743.4 → NP_035873.2  zinc finger protein 106 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL772299, AL935121
    Consensus CDS
    CCDS16621.1
    UniProtKB/Swiss-Prot
    A2AKH3, O55185, O88465, O88466, O88467, Q792M1, Q792P4, Q8CDZ8, Q8R3I4, Q9ESU3
    UniProtKB/TrEMBL
    R4GML0
    Related
    ENSMUSP00000055602.7, ENSMUST00000055241.13
    Conserved Domains (4) summary
    cd00200
    Location:1530 → 1807
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00020
    Location:7 → 29
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:530 → 681
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:1580 → 1619
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    120337303..120394345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499042.5 → XP_006499105.1  zinc finger protein 106 isoform X2

    UniProtKB/Swiss-Prot
    A2AKH3, O55185, O88465, O88466, O88467, Q792M1, Q792P4, Q8CDZ8, Q8R3I4, Q9ESU3
    Conserved Domains (3) summary
    cd00200
    Location:1464 → 1741
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05109
    Location:464 → 615
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:1514 → 1553
    7WD40; WD40 repeat [structural motif]

  2. XM_030248878.2 → XP_030104738.1  zinc finger protein 106 isoform X1

    UniProtKB/Swiss-Prot
    A2AKH3, O55185, O88465, O88466, O88467, Q792M1, Q792P4, Q8CDZ8, Q8R3I4, Q9ESU3
    UniProtKB/TrEMBL
    R4GML0
    Conserved Domains (4) summary
    cd00200
    Location:1530 → 1807
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00020
    Location:7 → 29
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:530 → 681
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:1580 → 1619
    7WD40; WD40 repeat [structural motif]

  3. XM_030248880.1 → XP_030104740.1  zinc finger protein 106 isoform X3

    Conserved Domains (2) summary
    cd00200
    Location:741 → 1018
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:791 → 830
    7WD40; WD40 repeat [structural motif]

  4. XM_036159870.1 → XP_036015763.1  zinc finger protein 106 isoform X4

    Conserved Domains (2) summary
    cd00200
    Location:314 → 591
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:364 → 403
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_004939180.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_009165.1: Suppressed sequence

    Description
    NM_009165.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O88466.3 GenPept UniProtKB/Swiss-Prot:O88466

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