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Sema6c sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [ Mus musculus (house mouse) ]

Gene ID: 20360, updated on 27-Nov-2024

Summary

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Official Symbol
Sema6cprovided by MGI
Official Full Name
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Cprovided by MGI
Primary source
MGI:MGI:1338032
See related
Ensembl:ENSMUSG00000038777 AllianceGenome:MGI:1338032
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Semay; mKIAA1869
Summary
Enables semaphorin receptor binding activity. Predicted to be involved in several processes, including negative regulation of axon extension; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in cell surface and cytoplasm. Predicted to be active in plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and immune system. Orthologous to human SEMA6C (semaphorin 6C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in whole brain E14.5 (RPKM 28.2), CNS E14 (RPKM 23.1) and 18 other tissues See more
Orthologs
human all
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Genomic context

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See Sema6c in Genome Data Viewer
Location:
3 F2.1; 3 40.74 cM
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (95067731..95081361)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (95160420..95174050)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94945477-94945712 Neighboring gene LysM, putative peptidoglycan-binding, domain containing 1 Neighboring gene tumor necrosis factor, alpha-induced protein 8-like 2 Neighboring gene predicted gene 9169 Neighboring gene STARR-seq mESC enhancer starr_08369 Neighboring gene GA repeat binding protein, beta 2 Neighboring gene STARR-seq mESC enhancer starr_08372 Neighboring gene predicted gene, 16740 Neighboring gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 Neighboring gene CDC42 small effector 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Suppression of SEMA6C promotes preantral follicles atresia with decreased cell junctions in mice ovaries. Yan W, et al. J Cell Physiol, 2019 Apr. PMID 30256425
  2. Low expression of SEMA6C accelerates the primordial follicle activation in the neonatal mouse ovary. Zhou S, et al. J Cell Mol Med, 2018 Jan. PMID 28881413, Free PMC Article
  3. Semaphorin 6C leads to GSK-3-dependent growth cone collapse and redistributes after entorhino-hippocampal axotomy. Burgaya F, et al. Mol Cell Neurosci, 2006 Nov. PMID 17029982
  4. Semaphorin 6C expression in innervated and denervated skeletal muscle. Svensson A, et al. J Mol Histol, 2008 Feb. PMID 17605078
  5. Cloning and characterization of a novel class VI semaphorin, semaphorin Y. Kikuchi K, et al. Mol Cell Neurosci, 1999 Jan. PMID 10049528

See all (40) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Sema6c was involved in follicle development, and the suppression of SEMA6C led to cell junction defection by activating the PI3K/AKT pathway.
    Title: Suppression of SEMA6C promotes preantral follicles atresia with decreased cell junctions in mice ovaries.
  2. down-regulation of SEMA6C led to massive primordial follicle activation.
    Title: Low expression of SEMA6C accelerates the primordial follicle activation in the neonatal mouse ovary.
  3. Class 6 transmembrane semaphorins are unlikely to serve as major PlexA receptor ligands for the assembly of murine retinal circuit laminar organization.
    Title: Sema6B, Sema6C, and Sema6D expression and function during mammalian retinal development.
  4. The expression of Semaphorin 6C mRNA and immunoreactivity has been compared in innervated and denervated mouse hind-limb and hemidiaphragm muscles.
    Title: Semaphorin 6C expression in innervated and denervated skeletal muscle.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Gene trapped (1) 
  • Targeted (2)  1 citation

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables chemorepellent activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables semaphorin receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables semaphorin receptor binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in axon guidance ISO
Inferred from Sequence Orthology
more info
  
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of axon extension ISO
Inferred from Sequence Orthology
more info
  
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
  
involved_in neural crest cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in semaphorin-plexin signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
semaphorin-6C
Names
Sema Y
m-Sema Y
semaphorin-Y

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001272024.2 → NP_001258953.1  semaphorin-6C isoform 1 precursor

    See identical proteins and their annotated locations for NP_001258953.1

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    Consensus CDS
    CCDS71289.1
    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Related
    ENSMUSP00000088333.2, ENSMUST00000090823.8
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. NM_001428690.1 → NP_001415619.1  semaphorin-6C isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    UniProtKB/TrEMBL
    E9Q613

  3. NM_001428691.1 → NP_001415620.1  semaphorin-6C isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    UniProtKB/TrEMBL
    E9Q613

  4. NM_001428692.1 → NP_001415621.1  semaphorin-6C isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    UniProtKB/TrEMBL
    E9Q613

  5. NM_001428693.1 → NP_001415622.1  semaphorin-6C isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    UniProtKB/Swiss-Prot
    Q9WTM3

  6. NM_001428694.1 → NP_001415623.1  semaphorin-6C isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    UniProtKB/Swiss-Prot
    Q9WTM3

  7. NM_001428695.1 → NP_001415624.1  semaphorin-6C isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    UniProtKB/Swiss-Prot
    Q9WTM3

  8. NM_001428696.1 → NP_001415625.1  semaphorin-6C isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  9. NM_011351.3 → NP_035481.1  semaphorin-6C isoform 2 precursor

    See identical proteins and their annotated locations for NP_035481.1

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    Consensus CDS
    CCDS17604.1
    UniProtKB/Swiss-Prot
    Q9WTM3
    UniProtKB/TrEMBL
    Q91Y36
    Related
    ENSMUSP00000144039.2, ENSMUST00000202315.3
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:686 → 929
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

RNA

  1. NR_073549.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    Related
    ENSMUST00000204709.3

  2. NR_073550.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190
    Related
    ENSMUST00000142449.9

  3. NR_073551.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  4. NR_190459.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  5. NR_190460.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  6. NR_190461.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  7. NR_190462.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  8. NR_190463.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  9. NR_190464.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  10. NR_190465.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  11. NR_190466.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  12. NR_190467.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

  13. NR_190468.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131769, AC140190

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    95067731..95081361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006501205.1 → XP_006501268.1  semaphorin-6C isoform X2

    Related
    ENSMUSP00000088331.4, ENSMUST00000090821.10
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:686 → 929
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_036162976.1 → XP_036018869.1  semaphorin-6C isoform X3

    UniProtKB/TrEMBL
    Q91Y36
    Conserved Domains (3) summary
    PHA03247
    Location:680 → 922
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:485 → 537
    PSI; Plexin repeat
    cl15693
    Location:54 → 484
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_006501194.4 → XP_006501257.1  semaphorin-6C isoform X1

    See identical proteins and their annotated locations for XP_006501257.1

    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_030252487.1 → XP_030108347.1  semaphorin-6C isoform X2

    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:686 → 929
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  5. XM_006501192.5 → XP_006501255.1  semaphorin-6C isoform X1

    See identical proteins and their annotated locations for XP_006501255.1

    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  6. XM_030252503.2 → XP_030108363.1  semaphorin-6C isoform X17

    Conserved Domains (3) summary
    smart00423
    Location:88 → 109
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:283 → 525
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:1 → 87
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  7. XM_006501193.4 → XP_006501256.1  semaphorin-6C isoform X1

    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  8. XM_030252486.1 → XP_030108346.1  semaphorin-6C isoform X2

    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:686 → 929
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  9. XM_006501201.5 → XP_006501264.1  semaphorin-6C isoform X1

    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  10. XM_006501195.4 → XP_006501258.1  semaphorin-6C isoform X1

    See identical proteins and their annotated locations for XP_006501258.1

    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  11. XM_006501196.4 → XP_006501259.1  semaphorin-6C isoform X1

    See identical proteins and their annotated locations for XP_006501259.1

    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  12. XM_036162977.1 → XP_036018870.1  semaphorin-6C isoform X5

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:656 → 898
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:461 → 482
    PSI; Plexin repeat
    cl15693
    Location:126 → 460
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  13. XM_006501207.4 → XP_006501270.1  semaphorin-6C isoform X6

    UniProtKB/TrEMBL
    Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:456 → 477
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:651 → 893
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:16 → 455
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  14. XM_006501197.4 → XP_006501260.1  semaphorin-6C isoform X1

    See identical proteins and their annotated locations for XP_006501260.1

    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  15. XM_006501198.4 → XP_006501261.1  semaphorin-6C isoform X1

    See identical proteins and their annotated locations for XP_006501261.1

    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  16. XM_006501202.4 → XP_006501265.1  semaphorin-6C isoform X1

    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  17. XM_006501204.4 → XP_006501267.1  semaphorin-6C isoform X1

    See identical proteins and their annotated locations for XP_006501267.1

    UniProtKB/TrEMBL
    E9Q613, Q91Y36
    Related
    ENSMUSP00000129081.3, ENSMUST00000168321.8
    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:714 → 956
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  18. XM_030252491.1 → XP_030108351.1  semaphorin-6C isoform X10

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:606 → 848
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  19. XM_030252489.2 → XP_030108349.1  semaphorin-6C isoform X2

    Conserved Domains (3) summary
    smart00423
    Location:519 → 540
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:686 → 929
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  20. XM_006501208.4 → XP_006501271.1  semaphorin-6C isoform X12

    See identical proteins and their annotated locations for XP_006501271.1

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    smart00423
    Location:372 → 393
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:567 → 809
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:1 → 371
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  21. XM_036162982.1 → XP_036018875.1  semaphorin-6C isoform X13

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:547 → 789
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:352 → 373
    PSI; Plexin repeat
    cl15693
    Location:17 → 351
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  22. XM_030252501.1 → XP_030108361.1  semaphorin-6C isoform X12

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    smart00423
    Location:372 → 393
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:567 → 809
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:1 → 371
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  23. XM_030252492.1 → XP_030108352.1  semaphorin-6C isoform X10

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:606 → 848
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  24. XM_030252495.1 → XP_030108355.1  semaphorin-6C isoform X11

    Conserved Domains (3) summary
    PHA03247
    Location:578 → 821
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  25. XM_030252490.1 → XP_030108350.1  semaphorin-6C isoform X8

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    smart00423
    Location:479 → 500
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:646 → 889
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:39 → 478
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  26. XM_030252505.1 → XP_030108365.1  semaphorin-6C isoform X18

    Conserved Domains (3) summary
    smart00423
    Location:88 → 109
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:213 → 453
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:1 → 87
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  27. XM_030252504.1 → XP_030108364.1  semaphorin-6C isoform X18

    Conserved Domains (3) summary
    smart00423
    Location:88 → 109
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:213 → 453
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:1 → 87
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  28. XM_036162978.1 → XP_036018871.1  semaphorin-6C isoform X7

    Conserved Domains (3) summary
    PHA03247
    Location:652 → 895
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:485 → 537
    PSI; Plexin repeat
    cl15693
    Location:54 → 484
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  29. XM_036162983.1 → XP_036018876.1  semaphorin-6C isoform X13

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:547 → 789
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:352 → 373
    PSI; Plexin repeat
    cl15693
    Location:17 → 351
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  30. XM_006501209.4 → XP_006501272.1  semaphorin-6C isoform X12

    See identical proteins and their annotated locations for XP_006501272.1

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    smart00423
    Location:372 → 393
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:567 → 809
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:1 → 371
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  31. XM_030252506.1 → XP_030108366.1  semaphorin-6C isoform X18

    Conserved Domains (3) summary
    smart00423
    Location:88 → 109
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:213 → 453
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:1 → 87
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  32. XM_030252493.1 → XP_030108353.1  semaphorin-6C isoform X10

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:606 → 848
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  33. XM_030252496.1 → XP_030108356.1  semaphorin-6C isoform X11

    Conserved Domains (3) summary
    PHA03247
    Location:578 → 821
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  34. XM_036162981.1 → XP_036018874.1  semaphorin-6C isoform X11

    Conserved Domains (3) summary
    PHA03247
    Location:578 → 821
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  35. XM_036162980.1 → XP_036018873.1  semaphorin-6C isoform X10

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:606 → 848
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  36. XM_030252499.1 → XP_030108359.1  semaphorin-6C isoform X11

    Conserved Domains (3) summary
    PHA03247
    Location:578 → 821
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:411 → 432
    PSI; Plexin repeat
    cl15693
    Location:1 → 410
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  37. XM_030252502.2 → XP_030108362.1  semaphorin-6C isoform X15

    Conserved Domains (3) summary
    PHA03247
    Location:539 → 782
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:372 → 393
    PSI; Plexin repeat
    cl15693
    Location:1 → 371
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  38. XM_036162986.1 → XP_036018879.1  semaphorin-6C isoform X15

    Conserved Domains (3) summary
    PHA03247
    Location:539 → 782
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:372 → 393
    PSI; Plexin repeat
    cl15693
    Location:1 → 371
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  39. XM_036162985.1 → XP_036018878.1  semaphorin-6C isoform X14

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:544 → 787
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:377 → 398
    PSI; Plexin repeat
    cl15693
    Location:1 → 376
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  40. XM_006501206.3 → XP_006501269.1  semaphorin-6C isoform X4

    UniProtKB/TrEMBL
    Q91Y36
    Conserved Domains (3) summary
    smart00423
    Location:479 → 500
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:674 → 916
    PHA03247; large tegument protein UL36; Provisional
    cl15693
    Location:39 → 478
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  41. XM_036162979.1 → XP_036018872.1  semaphorin-6C isoform X9

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:611 → 853
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:416 → 437
    PSI; Plexin repeat
    cl15693
    Location:81 → 415
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  42. XM_036162984.1 → XP_036018877.1  semaphorin-6C isoform X13

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:547 → 789
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:352 → 373
    PSI; Plexin repeat
    cl15693
    Location:17 → 351
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  43. XM_036162987.1 → XP_036018880.1  semaphorin-6C isoform X16

    UniProtKB/TrEMBL
    Q6ZPG8
    Conserved Domains (3) summary
    PHA03247
    Location:573 → 815
    PHA03247; large tegument protein UL36; Provisional
    pfam01437
    Location:378 → 399
    PSI; Plexin repeat
    cl15693
    Location:43 → 377
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9WTM3.1 GenPept UniProtKB/Swiss-Prot:Q9WTM3

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