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SIMC1P1 SIMC1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 202181, updated on 28-Oct-2024

Summary

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Official Symbol
SIMC1P1provided by HGNC
Official Full Name
SIMC1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:56818
See related
AllianceGenome:HGNC:56818
Gene type
pseudo
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 7.4), ovary (RPKM 6.1) and 23 other tissues See more
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Genomic context

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See SIMC1P1 in Genome Data Viewer
Location:
5q35.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (177618500..177672277, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (178160778..178215750, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (177045501..177099278, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:177020409-177021608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23731 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23732 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:177033623-177034226 Neighboring gene transmembrane p24 trafficking protein 9 Neighboring gene beta-1,4-galactosyltransferase 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16705 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16706 Neighboring gene uncharacterized LOC107986489 Neighboring gene family with sequence similarity 153 member A Neighboring gene MPRA-validated peak5597 silencer Neighboring gene uncharacterized LOC100419951

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Isolation and characterization of novel CAG repeat containing genes expressed in human brain. Zühlke C, et al. DNA Seq, 1999. PMID 10565538
  2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • SUMO interacting motifs containing 1 pseudogene

Clone Names

  • FLJ11561, FLJ52236

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026921.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC138819, AC139795

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    177618500..177672277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    178160778..178215750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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