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xtr-2 MX region of TRA-2 Related [ Caenorhabditis elegans ]

Gene ID: 192058, updated on 4-Jan-2025

Summary

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Official Symbol
xtr-2
Official Full Name
MX region of TRA-2 Related
Primary source
WormBase:WBGene00006966
Locus tag
CELE_F17A2.1
See related
AllianceGenome:WB:WBGene00006966
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in hermaphrodite germ-line sex determination and hermaphrodite somatic sex determination. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See xtr-2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Sequence:
Chromosome: X; NC_003284.9 (12315568..12318184)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Histone deacetylase 14 Neighboring gene pseudo Neighboring gene Homeobox protein ceh-40 Neighboring gene Uncharacterized protein Neighboring gene Serpentine receptor class delta-40 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Germ-line regulation of the Caenorhabditis elegans sex-determining gene tra-2. Kuwabara PE, et al. Dev Biol, 1998 Dec 1. PMID 9851857
  2. Cell-Specific mRNA Profiling of the Caenorhabditis elegans Somatic Gonadal Precursor Cells Identifies Suites of Sex-Biased and Gonad-Enriched Transcripts. Kroetz MB, et al. G3 (Bethesda), 2015 Oct 23. PMID 26497144, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in hermaphrodite germ-line sex determination IEA
Inferred from Electronic Annotation
more info
  
involved_in hermaphrodite somatic sex determination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MX region of TRA-2 Related
NP_001309688.1
  • Product from WormBase gene class xtr;
    Confirmed by transcript evidence
NP_510059.2
  • Product from WormBase gene class xtr;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    12315568..12318184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077658.4 → NP_510059.2  MX region of TRA-2 Related [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MBZ9
    Conserved Domains (1) summary
    pfam04050
    Location:185 → 226
    Upf2; Up-frameshift suppressor 2

  2. NM_001322636.1 → NP_001309688.1  MX region of TRA-2 Related [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MD22
    Conserved Domains (1) summary
    pfam04050
    Location:150 → 191
    Upf2; Up-frameshift suppressor 2
Nucleotide Protein
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