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Y105C5B.11 RING-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 190893, updated on 9-Dec-2024

Summary

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Official Symbol
Y105C5B.11
Official Full Name
RING-type domain-containing protein
Primary source
WormBase:WBGene00013651
Locus tag
CELE_Y105C5B.11
See related
AllianceGenome:WB:WBGene00013651
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See Y105C5B.11 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
8
Sequence:
Chromosome: IV; NC_003282.8 (15937062..15941503, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING-type domain-containing protein
NP_001263827.1
  • Confirmed by transcript evidence
NP_502900.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    15937062..15941503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070499.4 → NP_502900.3  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502900.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U313
    Conserved Domains (3) summary
    cd00162
    Location:528 → 569
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    pfam03938
    Location:421 → 489
    OmpH; Outer membrane protein (OmpH-like)
    cl17238
    Location:527 → 569
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. NM_001276898.2 → NP_001263827.1  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263827.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    K8ERW6
    Conserved Domains (3) summary
    cd00162
    Location:717 → 758
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    pfam03938
    Location:610 → 678
    OmpH; Outer membrane protein (OmpH-like)
    cl17238
    Location:716 → 758
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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