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oig-2 Ig-like domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 189675, updated on 9-Dec-2024

Summary

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Official Symbol
oig-2
Official Full Name
Ig-like domain-containing protein
Primary source
WormBase:WBGene00003860
Locus tag
CELE_Y38F1A.9
See related
AllianceGenome:WB:WBGene00003860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in sarcoplasmic reticulum. Is expressed in several structures, including midbody; neurons; pharynx; tail; and ventral nerve cord. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See oig-2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003280.10 (13006613..13008164, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Serpentine Receptor, class T Neighboring gene BTB domain-containing protein Neighboring gene Serine/threonine-protein kinase max-2;non-specific serine/threonine protein kinase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide map of conserved microRNA targets in C. elegans. Lall S, et al. Curr Biol, 2006 Mar 7. PMID 16458514
  2. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  3. The conserved histone chaperone LIN-53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans. Müthel S, et al. Aging Cell, 2019 Dec. PMID 31397537, Free PMC Article
  4. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in sarcoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
Ig-like domain-containing protein
NP_496767.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    13006613..13008164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064366.3 → NP_496767.1  Ig-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496767.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWM1
    Conserved Domains (1) summary
    cl11960
    Location:5 → 87
    Ig; Immunoglobulin domain
Nucleotide Protein
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