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txt-3 Vitelline membrane outer layer protein 1 [ Caenorhabditis elegans ]

Gene ID: 189407, updated on 9-Dec-2024

Summary

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Official Symbol
txt-3
Official Full Name
Vitelline membrane outer layer protein 1
Primary source
WormBase:WBGene00021176
Locus tag
CELE_Y9C9A.1
See related
AllianceGenome:WB:WBGene00021176
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in extracellular space. Orthologous to human VMO1 (vitelline membrane outer layer 1 homolog). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See txt-3 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (4963958..4965456)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Vitelline membrane outer layer protein 1
NP_500684.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4963958..4965456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068283.4 → NP_500684.2  Vitelline membrane outer layer protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500684.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N2S5
    Conserved Domains (2) summary
    cd00220
    Location:19 → 195
    VMO-I; Vitelline membrane outer layer protein I (VMO-I) domain, VMO-I is one of the proteins found in the outer layer of the vitelline membrane of poultry eggs; VMO-I, lysozyme, and VMO-II are tightly bound to ovomucin; this complex forms the backbone of the ...
    pfam03762
    Location:21 → 195
    VOMI; Vitelline membrane outer layer protein I (VOMI)
Nucleotide Protein
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