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W08G11.3 Trichohyalin [ Caenorhabditis elegans ]

Gene ID: 189304, updated on 18-Sep-2024

Summary

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Official Symbol
W08G11.3
Official Full Name
Trichohyalin
Primary source
WormBase:WBGene00012347
Locus tag
CELE_W08G11.3
See related
AllianceGenome:WB:WBGene00012347
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See W08G11.3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
10
Sequence:
Chromosome: V; NC_003283.11 (16367681..16372125)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DUF268 domain-containing protein Neighboring gene Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1 Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Major sperm protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Trichohyalin
NP_001041179.1
  • Confirmed by transcript evidence
NP_001041180.1
  • Confirmed by transcript evidence
NP_001360579.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    16367681..16372125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047714.5 → NP_001041179.1  Trichohyalin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001041179.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2XMY4
    Conserved Domains (2) summary
    COG1196
    Location:69 → 372
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05518
    Location:373 → 466
    Totivirus_coat; Totivirus coat protein

  2. NM_001373172.2 → NP_001360579.1  Trichohyalin [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A486WYQ4
    Conserved Domains (1) summary
    COG1196
    Location:69 → 374
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. NM_001047715.5 → NP_001041180.1  Trichohyalin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001041180.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2XMY3
    Conserved Domains (2) summary
    COG1196
    Location:70 → 373
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam05518
    Location:374 → 467
    Totivirus_coat; Totivirus coat protein
Nucleotide Protein
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