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clc-21 CLaudin-like in Caenorhabditis [ Caenorhabditis elegans ]

Gene ID: 188987, updated on 4-Jan-2025

Summary

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Official Symbol
clc-21
Official Full Name
CLaudin-like in Caenorhabditis
Primary source
WormBase:WBGene00012081
Locus tag
CELE_T27C5.8
See related
AllianceGenome:WB:WBGene00012081
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See clc-21 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (17417133..17418437)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CLaudin-like in Caenorhabditis
NP_507407.2
  • Confirmed by transcript evidence;
    Product from WormBase gene class clc

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    17417133..17418437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075006.3 → NP_507407.2  CLaudin-like in Caenorhabditis [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507407.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O45852
    Conserved Domains (1) summary
    pfam06653
    Location:78 → 159
    Claudin_3; Tight junction protein, Claudin-like
Nucleotide Protein
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