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pqn-68 D-aminoacyl-tRNA deacylase [ Caenorhabditis elegans ]

Gene ID: 188555, updated on 4-Jan-2025

Summary

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Official Symbol
pqn-68
Official Full Name
D-aminoacyl-tRNA deacylase
Primary source
WormBase:WBGene00004151
Locus tag
CELE_T16G1.10
See related
AllianceGenome:WB:WBGene00004151
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable D-tyrosyl-tRNA(Tyr) deacylase activity. Predicted to be involved in tRNA metabolic process. Predicted to be active in cytoplasm. Orthologous to human DTD1 (D-aminoacyl-tRNA deacylase 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See pqn-68 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (12952636..12953208)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene EIF3k Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Eukaryotic translation initiation factor 3 subunit K Neighboring gene Rhodanese domain-containing protein Neighboring gene ncRNA Neighboring gene Transport and Golgi organization protein 2 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables D-aminoacyl-tRNA deacylase activity IEA
Inferred from Electronic Annotation
more info
  
enables D-tyrosyl-tRNA(Tyr) deacylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in aminoacyl-tRNA metabolism involved in translational fidelity IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
D-aminoacyl-tRNA deacylase
NP_001041168.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12952636..12953208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047703.2 → NP_001041168.1  D-aminoacyl-tRNA deacylase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001041168.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XUP4
    Conserved Domains (1) summary
    cl00253
    Location:1 → 150
    Dtyr_deacylase; D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not ...

RNA

  1. NR_003175.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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