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ttr-59 Transthyretin-like family protein [ Caenorhabditis elegans ]

Gene ID: 188262, updated on 9-Dec-2024

Summary

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Official Symbol
ttr-59
Official Full Name
Transthyretin-like family protein
Primary source
WormBase:WBGene00020339
Locus tag
CELE_T08A9.11
See related
AllianceGenome:WB:WBGene00020339
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cell surface; extracellular region; and membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See ttr-59 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Sequence:
Chromosome: X; NC_003284.9 (7329818..7330669)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Synaptogyrin homolog 1 Neighboring gene TransThyretin-Related family domain Neighboring gene Autophagy-related protein 11 C-terminal domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transthyretin-like family protein
NP_001123180.1
  • Confirmed by transcript evidence
NP_741833.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    7329818..7330669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129708.3 → NP_001123180.1  Transthyretin-like family protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001123180.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYJ2
    Conserved Domains (1) summary
    pfam01060
    Location:34 → 110
    TTR-52; Transthyretin-like family

  2. NM_171722.4 → NP_741833.1  Transthyretin-like family protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741833.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MPX6
Nucleotide Protein
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