U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

T04A11.2 Phenazine biosynthesis-like domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 188043, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
T04A11.2
Official Full Name
Phenazine biosynthesis-like domain-containing protein
Primary source
WormBase:WBGene00011417
Locus tag
CELE_T04A11.2
See related
AllianceGenome:WB:WBGene00011417
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable isomerase activity. Predicted to be involved in biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing). [provided by Alliance of Genome Resources, Jan 2025]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See T04A11.2 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (12477373..12479000, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ig-like and fibronectin type-III domain-containing protein 2 Neighboring gene ncRNA Neighboring gene Phenazine biosynthesis-like domain-containing protein Neighboring gene Ig-like and fibronectin type-III domain-containing protein 1 Neighboring gene Phenazine biosynthesis-like domain-containing protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Phenazine biosynthesis-like domain-containing protein
NP_502386.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    12477373..12479000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069985.3 → NP_502386.1  Phenazine biosynthesis-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502386.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECB5
    Conserved Domains (2) summary
    pfam02567
    Location:10 → 311
    PhzC-PhzF; Phenazine biosynthesis-like protein
    cl19724
    Location:3 → 265
    DAP_epimerase; Diaminopimelate epimerase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials