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R10E4.9 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [ Caenorhabditis elegans ]

Gene ID: 187773, updated on 9-Dec-2024

Summary

Official Symbol
R10E4.9
Official Full Name
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Primary source
WormBase:WBGene00011205
Locus tag
CELE_R10E4.9
See related
AllianceGenome:WB:WBGene00011205
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Located in plasma membrane. Orthologous to human HACD3 (3-hydroxyacyl-CoA dehydratase 3). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See R10E4.9 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (4301620..4302393, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Endonuclease III homolog Neighboring gene DUF1996 domain-containing protein Neighboring gene GP-PDE domain-containing protein Neighboring gene C2H2-type domain-containing protein Neighboring gene Cnd1 domain-containing protein Neighboring gene Defective in cullin neddylation protein 1 Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 
enables very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in fatty acid elongation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in sphingolipid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in very long-chain fatty acid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane HDA PubMed 

General protein information

Preferred Names
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
NP_497864.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    4301620..4302393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065463.2NP_497864.1  Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497864.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21905
    Conserved Domains (1) summary
    cl02156
    Location:50148
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA