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R03H10.6 Replication factor A protein 1 [ Caenorhabditis elegans ]

Gene ID: 187558, updated on 9-Dec-2024

Summary

Official Symbol
R03H10.6
Official Full Name
Replication factor A protein 1
Primary source
WormBase:WBGene00019858
Locus tag
CELE_R03H10.6
See related
AllianceGenome:WB:WBGene00019858
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables double-stranded DNA binding activity. Predicted to be involved in DNA metabolic process and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be part of DNA replication factor A complex. Orthologous to human RPA1 (replication protein A1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See R03H10.6 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (4171264..4173498, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Ig-like domain-containing protein Neighboring gene DUF281 domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Replication factor A protein 1

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables damaged DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables single-stranded telomeric DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 
involved_in DNA unwinding involved in DNA replication IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in double-strand break repair via homologous recombination IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in telomere maintenance via telomerase IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of DNA replication factor A complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Replication factor A protein 1
NP_494733.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    4171264..4173498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062332.7NP_494733.2  Replication factor A protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494733.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GYL9
    Conserved Domains (2) summary
    TIGR00617
    Location:104322
    rpa1; replication factor-a protein 1 (rpa1)
    cl09930
    Location:7103
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.