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nhr-202 NR LBD domain-containing protein;Nuclear Hormone Receptor family [ Caenorhabditis elegans ]

Gene ID: 187409, updated on 9-Dec-2024

Summary

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Official Symbol
nhr-202
Official Full Name
NR LBD domain-containing protein;Nuclear Hormone Receptor family
Primary source
WormBase:WBGene00019742
Locus tag
CELE_M02H5.4
See related
AllianceGenome:WB:WBGene00019742
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See nhr-202 in Genome Data Viewer
Location:
chromosome: V
Exon count:
8
Sequence:
Chromosome: V; NC_003283.11 (462588..464963)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene NR LBD domain-containing protein;Nuclear Hormone Receptor family Neighboring gene Nuclear Hormone Receptor family Neighboring gene Nuclear Hormone Receptor family Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Serpentine Receptor, class T

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of a transcription-based bioanalytical tool to quantify the toxic potencies of hydrophilic compounds in water using the nematode Caenorhabditis elegans. Karengera A, et al. Ecotoxicol Environ Saf, 2021 Dec 20. PMID 34700171
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NR LBD domain-containing protein;Nuclear Hormone Receptor family
NP_001300154.1
  • Confirmed by transcript evidence
NP_503210.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    462588..464963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070809.4 → NP_503210.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503210.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q966H8
    Conserved Domains (2) summary
    smart00399
    Location:21 → 90
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    pfam00104
    Location:183 → 397
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor

  2. NM_001313225.3 → NP_001300154.1  NR LBD domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AY13
    Conserved Domains (1) summary
    pfam00104
    Location:3 → 90
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor
Nucleotide Protein
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