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K04F10.1 AXH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 187002, updated on 2-Nov-2024

Summary

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Official Symbol
K04F10.1
Official Full Name
AXH domain-containing protein
Primary source
WormBase:WBGene00019394
Locus tag
CELE_K04F10.1
See related
AllianceGenome:WB:WBGene00019394
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1. Orthologous to several human genes including ATXN1L (ataxin 1 like). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See K04F10.1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (6365031..6366224)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Vacuolar protein sorting-associated protein 28 homolog Neighboring gene Protein KATNIP homolog Neighboring gene Protein FAM76A Neighboring gene F-box domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AXH domain-containing protein
NP_491837.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6365031..6366224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059436.7 → NP_491837.2  AXH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491837.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44771
    Conserved Domains (1) summary
    smart00536
    Location:121 → 234
    AXH; domain in Ataxins and HMG containing proteins
Nucleotide Protein
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