U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

F40C5.1 Transposase [ Caenorhabditis elegans ]

Gene ID: 185514, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
F40C5.1
Official Full Name
Transposase
Primary source
WormBase:WBGene00018228
Locus tag
CELE_F40C5.1
See related
AllianceGenome:WB:WBGene00018228
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chondroitin 4-sulfotransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process and positive regulation of response to oxidative stress. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jan 2025]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See F40C5.1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (3572708..3574157)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene UBC core domain-containing protein Neighboring gene UBC core domain-containing protein Neighboring gene Ground-like domain-containing protein Neighboring gene Alpha-1,4 glucan phosphorylase Neighboring gene tRNA-Pro

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chondroitin 4-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Transposase
NP_001309644.1
  • Partially confirmed by transcript evidence
NP_504005.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    3572708..3574157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071604.3 → NP_504005.2  Transposase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504005.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N5U3
    Conserved Domains (1) summary
    pfam03567
    Location:52 → 287
    Sulfotransfer_2; Sulfotransferase family

  2. NM_001322537.1 → NP_001309644.1  Transposase [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MB43
    Conserved Domains (1) summary
    cl22970
    Location:1 → 81
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools