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F20G2.5 CUB-like domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 184745, updated on 4-Jan-2025

Summary

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Official Symbol
F20G2.5
Official Full Name
CUB-like domain-containing protein
Primary source
WormBase:WBGene00008988
Locus tag
CELE_F20G2.5
See related
AllianceGenome:WB:WBGene00008988
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in defense response to Gram-negative bacterium and innate immune response. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See F20G2.5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (13771509..13773700)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene CRAL-TRIO domain-containing protein Neighboring gene ncRNA Neighboring gene Zinc metalloproteinase nas-24 Neighboring gene CUB-like domain-containing protein;CUB_2 domain-containing protein Neighboring gene TIL domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in innate immune response HEP PubMed 
involved_in innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in innate immune response IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
CUB-like domain-containing protein
NP_506410.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13771509..13773700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074009.6 → NP_506410.3  CUB-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506410.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93543
    Conserved Domains (1) summary
    cl00049
    Location:19 → 127
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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