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clec-3 C-type LECtin [ Caenorhabditis elegans ]

Gene ID: 183396, updated on 28-Oct-2024

Summary

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Official Symbol
clec-3
Official Full Name
C-type LECtin
Primary source
WormBase:WBGene00016577
Locus tag
CELE_C41H7.7
See related
AllianceGenome:WB:WBGene00016577
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See clec-3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_003280.10 (3017468..3019907, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Movement protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene AT-rich interactive domain-containing protein 2;STI1 domain-containing protein Neighboring gene C-type LECtin Neighboring gene Cationic amino acid transporter C-terminal domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A C. elegans Myc-like network cooperates with semaphorin and Wnt signaling pathways to control cell migration. Pickett CL, et al. Dev Biol, 2007 Oct 15. PMID 17826759, Free PMC Article
  2. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Schulenburg H, et al. Immunobiology, 2008. PMID 18406370
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
C-type LECtin
NP_494426.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    3017468..3019907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062025.3 → NP_494426.2  C-type LECtin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494426.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O17155
    Conserved Domains (2) summary
    smart00034
    Location:22 → 143
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cd00041
    Location:299 → 406
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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