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zip-5 BZIP domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 183204, updated on 4-Jan-2025

Summary

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Official Symbol
zip-5
Official Full Name
BZIP domain-containing protein
Primary source
WormBase:WBGene00007932
Locus tag
CELE_C34D1.5
See related
AllianceGenome:WB:WBGene00007932
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in head muscle; head neurons; intestine; tail neurons; and ventral nerve cord. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See zip-5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (13264545..13269827)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Guanine nucleotide-binding protein alpha-17 subunit Neighboring gene Alpha/beta hydrolase Neighboring gene ncRNA Neighboring gene PH domain-containing protein;Protein vav Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pathogenic bacteria modulate pheromone response to promote mating. Wu T, et al. Nature, 2023 Jan. PMID 36599989, Free PMC Article
  2. Co-regulation by Notch and Fos is required for cell fate specification of intermediate precursors during C. elegans uterine development. Oommen KS, et al. Development, 2007 Nov. PMID 17942488
  3. Two C. elegans DM domain proteins, DMD-3 and MAB-3, function in late stages of male somatic gonad development. Smith M, et al. Dev Biol, 2024 Oct. PMID 38880276
  4. High-throughput behavioral analysis in C. elegans. Swierczek NA, et al. Nat Methods, 2011 Jun 5. PMID 21642964, Free PMC Article
  5. Networks of bZIP protein-protein interactions diversified over a billion years of evolution. Reinke AW, et al. Science, 2013 May 10. PMID 23661758, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
BZIP domain-containing protein
NP_001122873.1
  • Confirmed by transcript evidence
NP_001122874.1
  • Partially confirmed by transcript evidence
NP_506292.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13264545..13269827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129401.4 → NP_001122873.1  BZIP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122873.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EG34
    Conserved Domains (2) summary
    cd14686
    Location:101 → 151
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    TIGR02168
    Location:83 → 194
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_073891.3 → NP_506292.1  BZIP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506292.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EBE5
    Conserved Domains (2) summary
    cd14686
    Location:112 → 162
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    TIGR02168
    Location:101 → 205
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. NM_001129402.1 → NP_001122874.1  BZIP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122874.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B1V8I9
Nucleotide Protein
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