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zipt-2.1 Zinc transporter ZIP3 [ Caenorhabditis elegans ]

Gene ID: 182346, updated on 4-Jan-2025

Summary

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Official Symbol
zipt-2.1
Official Full Name
Zinc transporter ZIP3
Primary source
WormBase:WBGene00014669
Locus tag
CELE_C06G8.3
See related
AllianceGenome:WB:WBGene00014669
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in zinc ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC39A1 (solute carrier family 39 member 1) and SLC39A2 (solute carrier family 39 member 2). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See zipt-2.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (10799654..10802250)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A pathway for low zinc homeostasis that is conserved in animals and acts in parallel to the pathway for high zinc homeostasis. Dietrich N, et al. Nucleic Acids Res, 2017 Nov 16. PMID 28977437, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in zinc ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in zinc ion transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Zinc transporter ZIP3
NP_001026796.1
  • Confirmed by transcript evidence
NP_001122755.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    10799654..10802250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129283.5 → NP_001122755.1  Zinc transporter ZIP3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122755.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A7LPH3
    Conserved Domains (1) summary
    pfam02535
    Location:47 → 302
    Zip; ZIP Zinc transporter

  2. NM_001031625.8 → NP_001026796.1  Zinc transporter ZIP3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001026796.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6BEU0
    Conserved Domains (1) summary
    pfam02535
    Location:47 → 327
    Zip; ZIP Zinc transporter

RNA

  1. NR_002446.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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