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lyst-1 BEACH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181379, updated on 9-Dec-2024

Summary

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Official Symbol
lyst-1
Official Full Name
BEACH domain-containing protein
Primary source
WormBase:WBGene00011361
Locus tag
CELE_T01H10.8
See related
AllianceGenome:WB:WBGene00011361
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein kinase binding activity. Predicted to be involved in protein localization. Predicted to be active in cytosol and membrane. Is expressed in intestine; neurons; and pharyngeal cell. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See lyst-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
36
Sequence:
Chromosome: X; NC_003284.9 (12128144..12141151, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Neurotransmitter-gated ion-channel ligand-binding domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Neurotransmitter-gated ion-channel ligand-binding domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Caenorhabditis elegans Homologue of LYST Functions in Endosome and Lysosome-Related Organelle Biogenesis. Barrett A, et al. Traffic, 2016 May. PMID 26822177
  2. Functional identification of microRNA-centered complexes in C. elegans. Hebbar S, et al. Sci Rep, 2022 May 3. PMID 35504914, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein localization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
BEACH domain-containing protein
NP_510030.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    12128144..12141151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077629.4 → NP_510030.2  BEACH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_510030.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EFC7
    Conserved Domains (1) summary
    smart01026
    Location:2087 → 2373
    Beach; Beige/BEACH domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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