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R04E5.8 ATP-dependent RNA helicase RhlE;JmjC domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181127, updated on 9-Dec-2024

Summary

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Official Symbol
R04E5.8
Official Full Name
ATP-dependent RNA helicase RhlE;JmjC domain-containing protein
Primary source
WormBase:WBGene00019871
Locus tag
CELE_R04E5.8
See related
AllianceGenome:WB:WBGene00019871
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable microtubule binding activity. Predicted to be involved in actin cytoskeleton organization. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See R04E5.8 in Genome Data Viewer
Location:
chromosome: X
Exon count:
8
Sequence:
Chromosome: X; NC_003284.9 (8801558..8806120, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Cholesterol uptake protein 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Metal transporter cnnm-2 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ATP-dependent RNA helicase RhlE;JmjC domain-containing protein
NP_001024832.1
  • Confirmed by transcript evidence
NP_001361959.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    8801558..8806120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029661.6 → NP_001024832.1  JmjC domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024832.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GYL4
    Conserved Domains (1) summary
    PRK12678
    Location:739 → 975
    PRK12678; transcription termination factor Rho; Provisional

  2. NM_001375091.2 → NP_001361959.1  ATP-dependent RNA helicase RhlE [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86DC5
    Conserved Domains (1) summary
    PRK12678
    Location:8 → 137
    PRK12678; transcription termination factor Rho; Provisional
Nucleotide Protein
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