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LOC18103577 F-box protein At-B [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18103577, updated on 3-Dec-2024

Summary

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Gene symbol
LOC18103577
Gene description
F-box protein At-B
Locus tag
POPTR_011G169800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18103577 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (19265480..19268500)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (18481674..18484713)

Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene receptor-like protein kinase BRI1-like 3 Neighboring gene putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 Neighboring gene COP9 signalosome complex subunit 6a Neighboring gene peroxisome biogenesis protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein At-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    19265480..19268500
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024581487.2 → XP_024437255.2  F-box protein At-B

    UniProtKB/TrEMBL
    A0A2K1YLI2, A0A2K1YLI4

RNA

  1. XR_002976822.2 RNA Sequence

  2. XR_002976821.2 RNA Sequence

  3. XR_002976820.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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