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gpcp-1 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [ Caenorhabditis elegans ]

Gene ID: 180600, updated on 4-Jan-2025

Summary

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Official Symbol
gpcp-1
Official Full Name
Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1
Primary source
WormBase:WBGene00019612
Locus tag
CELE_K10B3.6
See related
AllianceGenome:WB:WBGene00019612
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See gpcp-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
17
Sequence:
Chromosome: X; NC_003284.9 (3106535..3110628, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene C2H2-type domain-containing protein Neighboring gene ncRNA Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase 3 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables glycerophosphocholine phosphodiesterase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables starch binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in glycerophospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1
NP_001024784.2
  • Confirmed by transcript evidence
NP_001256998.1
  • Confirmed by transcript evidence
NP_001367507.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    3106535..3110628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029613.4 → NP_001024784.2  Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024784.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21407
    Conserved Domains (3) summary
    cd05814
    Location:5 → 134
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 621
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:323 → 623
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  2. NM_001270069.5 → NP_001256998.1  Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256998.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    G4S033, H2KYS5, H2KYS6, Q21407
    Conserved Domains (3) summary
    cd05814
    Location:5 → 134
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:345 → 647
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:349 → 649
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  3. NM_001380928.3 → NP_001367507.1  Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 1 [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    cd05814
    Location:5 → 134
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q21407.2

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